Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02526 ATGGGTCAAAGACTTAGCTTAAATCAGAAACCTTTGTGTGCCGCCTCCTCTTCATTACAACCTCCGCATGCTCTCCTTCGCTTTCTTCACACCATTGCCATCTCCAAACAAACCTTAACGAAACAAACACCCAAATCAATCATCCTACGAATTTTACACGTGTCTCCAGGCATGAAGATTCCCTGTTGTTCTTTTTGTACTTGTTTCTCAGCATCGGTCAAAGATCAAGAAACTAAGCACGAAGAGCCAGGTGAAGATGACGATGGAAACTTTCGCATATTCACTTACAGAGAATTGAATTCTGCCACGCGGGGTTTTCATCCCTCGGAAAAGATTGGAGAAGGAGGCTTTGGCTCTGTCTATAAGGGGCAGCTTCGGGATGGAAGTTTGGTGGCTGTTAAAGTGCTTTCGATTGAGCTAGATTCCGTAAAAGGAGAGAGGGGTTTTGTGGCAGAATTGAATACACTTGCAAATGTGAAGCACCAAAATCTAGTTATTCTTCGAGGGTGTTGTGTTGAAGGAGCCCACAGATACATAGTCTACGATTATATGGAAAACAATAGCCTTCGTCACACTTTCTTAGGTTCTGAGCAAAAAAGAATGACATTCAGCTGGGATGCTCGGAGAGATGTATCAGTTGGAGTGGCCAGAGTGCTTGCCTTTCTTCATGAGGAACTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCTTCTTGATGGAAATTTCACACCAAAAGTCTCAGATTTTGGCCTGGCCAAGCTGTTAAGAGATGAAAAATCCCACATCAGTACACAAGTTGCAGGCACATTAGGTTATCTTGCTCCAGAATATGCCAGTTCTGGCCACCTGACACGAAAATCAGATGTTTATAGTTTTGGAGTACTGCTTCTAGAAATTGTCAGTGGCCAAAGAGCAGTAGATGATCATGAAGGTGCGGATCGTTTCATAGTTGAGAAGTCCTGGGCAGCGTACGAGGAAAAAGATCTTTTGAGAATGGTAGATCCAATGCTGAAGATGAACTATGACATGGAAGAAGCTAAACGGGTGAGGCCACGAATGTCAGAGGTTGTAGACATGTTGAGCAAAAACATTGAGATTGAGGAGTTTCATGTTTCACGACCAGGATTTGTGAATGATATGAGGAACGCCAGAACGAGGAGGCAAGTAAATTCATCGGAGGAATCAAGTGCTAGTGCAGCAGCATCCTTTGCAGATTCCTCCGGATGGAGTACCTCCAATCTTGCTCGTTAG 1263 0.4378 MGQRLSLNQKPLCAASSSLQPPHALLRFLHTIAISKQTLTKQTPKSIILRILHVSPGMKIPCCSFCTCFSASVKDQETKHEEPGEDDDGNFRIFTYRELNSATRGFHPSEKIGEGGFGSVYKGQLRDGSLVAVKVLSIELDSVKGERGFVAELNTLANVKHQNLVILRGCCVEGAHRYIVYDYMENNSLRHTFLGSEQKRMTFSWDARRDVSVGVARVLAFLHEELQPHIVHRDIKSSNVLLDGNFTPKVSDFGLAKLLRDEKSHISTQVAGTLGYLAPEYASSGHLTRKSDVYSFGVLLLEIVSGQRAVDDHEGADRFIVEKSWAAYEEKDLLRMVDPMLKMNYDMEEAKRVRPRMSEVVDMLSKNIEIEEFHVSRPGFVNDMRNARTRRQVNSSEESSASAAASFADSSGWSTSNLAR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02526 420 MobiDBLite consensus disorder prediction 389 420 - -
Vimu6g02526 420 Pfam Protein kinase domain 107 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02526 420 SMART serkin_6 106 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02526 420 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
Vimu6g02526 420 Gene3D Phosphorylase Kinase; domain 1 75 183 - -
Vimu6g02526 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vimu6g02526 420 Gene3D Transferase(Phosphotransferase) domain 1 184 377 - -
Vimu6g02526 420 FunFam Lectin-domain containing receptor kinase A4.3 184 376 - -
Vimu6g02526 420 SUPERFAMILY Protein kinase-like (PK-like) 90 364 IPR011009 -
Vimu6g02526 420 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 58 408 - -
Vimu6g02526 420 CDD STKc_IRAK 112 366 - -
Vimu6g02526 420 FunFam Serine/threonine-protein kinase receptor 74 183 - -
Vimu6g02526 420 ProSiteProfiles Protein kinase domain profile. 106 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02526 Vimu-Chr6 22012898 22014736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02526 79 383 Receptor kinase-like Gene Family AT1G56120 47.546 1.74e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu6g02526 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02526 - - gmx:100790388 551.206