Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02523 ATGGCCAAGGACATAGAAACCGAGGTACCAACTGAATTGACTCACAAGGACTATTACGACCCACCCCCAGCCCCATTCTACGACCCCGCCGAGCTCCGCAAGTGGTCCTTCTACAGGGCTCTCATCGCCGAGTTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGCTACAACCACCAGACCCACACTGGCAACTCCTGCGATGGCGTCGGCATTCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCGGGTATTTCCGGGGGTCACATAAACCCCGCCGTCACGTTCGGGTTGTTTCTTGCCAGGAAGGTGTCGCTGGTGAGAGCAATCGCGTACATAGTGGCTCAGAGCTTGGGAGCTATATCTGGCGCGGGGCTGGTAAAGGCATTTCAGAAGAGCTACTACAACAGGTACAATGGTGGCGTGAACTTGCTCTCTGATGGGTACAGTAAAGGCACTGGCTTGGGCGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACTGTCTTCTCCGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTTCCCGTTTTGGCACCACTTCCAATTGGGTTCTCGGTGTTCGTGGTTCACTTGGCCACCATCCCTGTCACCGGCACTGGCATCAACCCCGCCAGAAGCTTCGGCCCTGCTGTCATATTCAACAACGAGAAAGCATGGGATGACCAGTGGATCTTCTGGGTCGGACCTTTCATCGGTGCAGCCATTGCTGCAATCTACCACCAGTACGTATTGAGGGCACATGCGGCAAAGGCTCTGGCGTCATTCGGGAGCTCCTCGCACCTGTAA 855 0.5602 MAKDIETEVPTELTHKDYYDPPPAPFYDPAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNHQTHTGNSCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIAYIVAQSLGAISGAGLVKAFQKSYYNRYNGGVNLLSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFSVFVVHLATIPVTGTGINPARSFGPAVIFNNEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAHAAKALASFGSSSHL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02523 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Vimu6g02523 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 271 IPR034294 -
Vimu6g02523 284 NCBIfam MIP family channel protein 43 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g02523 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g02523 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g02523 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g02523 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g02523 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g02523 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g02523 284 CDD MIP 39 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g02523 284 SUPERFAMILY Aquaporin-like 31 270 IPR023271 -
Vimu6g02523 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g02523 284 Gene3D Glycerol uptake facilitator protein. 24 283 IPR023271 -
Vimu6g02523 284 FunFam Probable aquaporin PIP1-2 24 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02523 Vimu-Chr6 21985268 21987170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02523 1 280 Major Intrinsic Protein MIP AT5G60660 79.152 2.32e-162 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02523 K09872 - gmx:100785783 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02523 6 21985268 21987170 Vimu3g02756 3 41924325 41924969 ECH
Vimu6g02523 6 21985268 21987170 Vimu6g02523 6 21985268 21987170 ECH
Vimu6g02523 6 21985268 21987170 Vimu4g00629 4 4655849 4656989 ECH