Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02515 ATGTTCACCAACCAACCTCTTTCACTCTTTGGTCCACTCAGTTGGGCGCCACCACATTCAGCTACCAATGCGCTACTCCACGTGCCACAATCCCAGGCCATGCTCCAATCCGACGTTCCTAATTCATTTTCAACAAACCCCATTTCTCGTTCCCTTCAGCTACCTACCCAACACACACCAACTCACCTCTATATAACTCTTCGACCAAACTCTTTTCTTCTCAGCAAATCCTCAAACACATCAACTCCTAAGCATTTCCTCTCTCTCTTTACAAAACTCATCTCCATTTTTCAATCTCTTCATTCTATCAACATGGAACCAACTACCCTCACCAACGGCAACCAAAACGGTTCCTTCTGCTTGACTTCCACCAAGAACAGTGATCCTCTCAATTGGGGAACGGCCGCGGAGGCGCTCAAGGGGAGCCACCTCGATGAGGTCAAGCGCATGGTGGCTGAATACCGCCAGCCGCTGGTCCGCCTCGGTGGCGAGACGCTCACCATCGCTCAGGTGGCGGCGGTCTCTGCACACGACCAAGGCGTGAGGGTGGAGCTGTCGGAGTCCGCTCGGGAAGGTGTTAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAATGGCACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACCTCACACCGCCGAACCAAACAAGGTGGTGCACTGCAGAAAGAACTCATCAGGTTTTTAAACGCCGGAATATTTGGAAATGGGACTGAATCAAGCCACACACTGCCACACACGGCAACTAGAGCAGCCATGCTAGTGAGGATAAACACTCTTCTTCAAGGCTACTCAGGCATCAGATTTGAAATCTTAGAAGCAATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACGGCTTCTGGAGATCTTGTTCCACTTTCCTATATTGCCGGTTTGCTAACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTAATTAATGCCAAGCAAGCTTTTCAATCGGCTAACATCAATTCTGACTTCTTTGAATTGCAACCTAAGGAAGGCCTTGCCCTTGTTAACGGCACGGCTGTCGGTTCTGGCTTAGCTTCTATAGTTCTCTTCGAAGCAAATATATTGGCTGTGTTGTCTGAAGTTCTATCAGCCATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAGTTCACCGATCATTTGACACACAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCCATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCCAAGAAACTGCACGAAATAGATCCTTTGCAAAAGCCAAAACAAGATAGATATGCCCTCAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAATTTCCAAGGAACCCCAATCGGAGTCTCTATGGACAACACACGTTTGGCTCTTGCATCTATTGGAAAACTCATGTTTGCTCAATTCTCCGAGCTTGTCAACGATTTTTACAACAACGGTCTGCCTTCAAATCTCACCGCCAGCAGAAATCCTAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGCTCCGAACTTCAGTATCTCGCAAATCCAGTAACAAGCCATGTTCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTCTTGGTCTGATTTCATCCAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACCTTCTTGATGGCACTTTGCCAAGCAATAGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACTGTCAGTCAAGTTTCCAAGAGGACTCTTACCATAGGTGGCAACGGAGAACTCCACCCTTCAAGATTTTGCGAAAAGGATCTACTGAAAGTGGTTGACAGGGAGTATGTATTTTCCTACATAGATGACCCATGCAGTGCTACATACCCCCTGACGCAAAAACTCAGGCAAGTGCTTGTAGACCATGCCTTGGTAAATGCGGAGAATGAGAAGGATGTTAACACATCAATCTTCCAAAAGATTGCAATTTTTGAGGAGGAGTTGAAGAACGTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGGAAAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTATCCACTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTGGATTGCTAACCGGAGAAAAGGTGAAGTCACCAGGTGAAGAGTTTGACAAATTATTCACAGCAATATGCCAGGGTAAAATCATTGACCCTCTTCTCGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCAATTTGTTAA 2460 0.4675 MFTNQPLSLFGPLSWAPPHSATNALLHVPQSQAMLQSDVPNSFSTNPISRSLQLPTQHTPTHLYITLRPNSFLLSKSSNTSTPKHFLSLFTKLISIFQSLHSINMEPTTLTNGNQNGSFCLTSTKNSDPLNWGTAAEALKGSHLDEVKRMVAEYRQPLVRLGGETLTIAQVAAVSAHDQGVRVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVINAKQAFQSANINSDFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLMALCQAIDLRHLEENLKSSVKNTVSQVSKRTLTIGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLTQKLRQVLVDHALVNAENEKDVNTSIFQKIAIFEEELKNVLPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02515 819 Gene3D Fumarase/aspartase (Central domain) 366 814 - -
Vimu6g02515 819 CDD PAL-HAL 164 629 IPR001106 -
Vimu6g02515 819 Gene3D - 632 753 IPR023144 -
Vimu6g02515 819 FunFam Phenylalanine ammonia-lyase 632 753 - -
Vimu6g02515 819 SUPERFAMILY L-aspartase-like 128 819 IPR008948 GO:0003824
Vimu6g02515 819 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 301 317 IPR022313 GO:0016841
Vimu6g02515 819 FunFam Phenylalanine ammonia-lyase 366 678 - -
Vimu6g02515 819 PANTHER HISTIDINE AMMONIA-LYASE 126 819 IPR001106 -
Vimu6g02515 819 FunFam Phenylalanine ammonia-lyase 119 365 - -
Vimu6g02515 819 NCBIfam phenylalanine ammonia-lyase 128 808 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vimu6g02515 819 Gene3D - 119 365 IPR024083 -
Vimu6g02515 819 Pfam Aromatic amino acid lyase 166 641 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02515 Vimu-Chr6 21890090 21893360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02515 128 819 Monolignol Biosynthesis Gene Families AT2G37040 83.815 0.0 1239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02515 K10775 - gmx:100787902 1341.25