Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02514 ATGGAACCAACTACCCTTACCAACGCTCACCAAAACGGTTCCTTCTGCTTGCCGTCCGCCAAGACCAGTGATCCACTGAATTGGGGAACGGCCGCGGAGGCGCTCAAGGGGAGCCACCTCGACGAGGTCAAACGCATGGTGGCCGAATACCGTCAGCCGCTGGTCCGCCTCGGTGGCGAGACGCTCACCATCGCTCAGGTGGCGGCGGTTTCTGCACACGACCAAGGCGTGAGGGTGGAGCTTTCGGAGTTTTTAAACGCCGGAATATTTGGAAATGGGACTGAATCAAGCCACACACTGCCACACACGGCAACTAGAGCAGCCATGCTAGTGAGGATAAACACTCTTCTTCAAGGCTACTCAGGCATCAGATTTGAAATCTTAGAAGCAATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACGGCTTCTGGAGATCTTGTTCCACTTTCCTATATTGCCGGTTTGCTAACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTAATTAATGCCAAGCAAGCTTTTCAATCGGCTAACATCAATTCTGACTTCTTTGAATTGCAACCTAAGGAAGGCCTTGCCCTTGTTAATGGCACGGCTGTCGGTTCTGGCTTAGCTTCTATAGTTCTCTTCGAAGCAAATATATTGGCTGTGTTGTCTGAAGTTCTATCAGCCATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAGTTCACCGATCATTTGACACACAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCCATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCCAAGAAACTGCACGAAATAGATCCTTTGCAAAAGCCAAAACAAGATAGATATGCCCTCAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAATTTCCAAGGAACCCCAATCGGAGTCTCTATGGACAACACACGTTTGGCTCTTGCATCTATTGGAAAACTCATGTTTGCTCAATTCTCCGAGCTTGTCAACGATTTTTACAACAACGGTCTGCCTTCAAATCTCACCGCCAGCAGAAATCCTAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGCTCCGAACTTCAGTATCTCGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTCTTGGTCTGATTTCATCCAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACCTTCTTGATGGCACTTTGCCAAGCAATAGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACTGTCAGTCAAGTTTCCAAGAGGACTCTTACCATAGGTGGCAACGGAGAACTCCACCCTTCAAGATTTTGCGAAAAGGATCTACTGAAAGTGGTTGACAGGGAGTATGTATTTTCCTACATAGATGACCCATGCAGTGCTACATACCCCCTGACGCAAAAACTCAGGCAAGTGCTTGTAGACCATGCCTTGGTAAATGCGGAGAATGAGAAGGATGTTAACACATCAATCTTCCAAAAGATTGCAATTTTTGAGGAGGAGTTGAAGAACGTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGGAAAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTATCCACTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTGGATTGCTAACCGGAGAAAAGGTGAAGTCACCAGGTGAAGAGTTTGACAAATTATTCACTGCAATATGCCAGGGTAAAATCATTGACCCTCTTCTCGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCAATATGTTAA 1998 0.464 MEPTTLTNAHQNGSFCLPSAKTSDPLNWGTAAEALKGSHLDEVKRMVAEYRQPLVRLGGETLTIAQVAAVSAHDQGVRVELSEFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVINAKQAFQSANINSDFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLMALCQAIDLRHLEENLKSSVKNTVSQVSKRTLTIGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLTQKLRQVLVDHALVNAENEKDVNTSIFQKIAIFEEELKNVLPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02514 665 Gene3D Fumarase/aspartase (Central domain) 212 660 - -
Vimu6g02514 665 SUPERFAMILY L-aspartase-like 24 665 IPR008948 GO:0003824
Vimu6g02514 665 FunFam Phenylalanine ammonia-lyase 212 524 - -
Vimu6g02514 665 NCBIfam phenylalanine ammonia-lyase 78 654 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vimu6g02514 665 Gene3D - 478 599 IPR023144 -
Vimu6g02514 665 Pfam Aromatic amino acid lyase 66 487 IPR001106 -
Vimu6g02514 665 Gene3D - 81 211 IPR024083 -
Vimu6g02514 665 Gene3D - 16 80 IPR024083 -
Vimu6g02514 665 PANTHER HISTIDINE AMMONIA-LYASE 20 83 IPR001106 -
Vimu6g02514 665 CDD PAL-HAL 60 475 IPR001106 -
Vimu6g02514 665 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 147 163 IPR022313 GO:0016841
Vimu6g02514 665 FunFam Phenylalanine ammonia-lyase 478 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02514 Vimu-Chr6 21878693 21881798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02514 24 665 Monolignol Biosynthesis Gene Families AT2G37040 77.746 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02514 K10775 - gmx:100811101 1210.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02514 6 21878693 21881798 Vimu3g02742 3 41728388 41733127 ECH
Vimu6g02514 6 21878693 21881798 Vimu6g02514 6 21878693 21881798 ECH
Vimu3g01225 3 21305930 21307603 Vimu6g02514 6 21878693 21881798 ECH