Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02513 TTGGGGAGGACGGGCTTTTGGTTAAGAGAGTACAGGAACCTTTGTGTTGCTCTAGAGAGGAGCGTAGCTCTGGTTTGTTTGACACTGCAGGAGACAAAAGCTTTTATTGTCGAATCGTCAGTGTTGCCGTTTGGAGATTCACCAGGACTTTATAACCAGTATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGTACAAAGGCCAAAATGCTCTGATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAAGTGATTTTGTTTGTATTATCTTTGAATTGCAATAGCCAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTATGGGAAACAGAGTTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAATAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTTTAGTGAAGAAAATGATATATTATTTCAAATACTGTTGTCATCTTCTGATATTGTTGTTGAGGACTTACATGAACTAAGATGCATTACATGGGAAGCGATAATAATTGATGAATGCCAGCAATCCAGAATTTCAGGACACTTGGACCATATCAAGATTTTAAAAACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGACATGATTATATCAAACTGCTTTCATTCCTCAAGTCTGCACATCATGAACCAAGTATTGCTCCAATAGAAACTTCTTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTCAAATGCAAATCTGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAACAGTATTGTTCAATGCTGCTTTCAAACTTAATTTTGTTATGCTCAGGCCAGAAGTCTGATGCAGTTGGTGCGCTCCATGAGCTTATTATCTCAACAAGGAAGTGCTGTGACCACCCTTATCTCCTGGAGCCGGCACTGCATAATTCTGTTGCTAAGGGTCTACCTGTTGAAGAACATTTAGATATTGGTATAAAAGCAAGCGGAAAACTGCTACTTCTTGAAAAAATCCTTTTGGAAGCAAAAAGTCGTGGGTTAAGGGTGTTAATATTATTCCAGATTCTTGAGGATTCAGTTAGCTCTTTTCATTTCGAAAAACTACAGTCATCTTGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTATAGATTGCTATGTGCGATATGATAGAGCTTATACCCCTAAAACAAAGGAAGCTGCTTTAGACACATTTAATGATCGAGACAGTGGTAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCCCTAGTGTTAAGCTTTCTTCAGTGGACATTGTTATATTGTTTGACAGTGATTTTGACCCTCACAATGACCTAAGAGGTTTGCAAAGGATGTCTATCAGCACACAGTTGAAACAATTAACCGTTTTCAGATTGTACTCATATTGCACTGTTGAAGAAAGGATTTTAATGCTTGCAAAGGAGGGTATATCTCTTGACAGTAACGTGCGGTTGATTAGTCATAGTATTTCTCACACTCTTCTAAAATGGGGCACCTCTCATCTGTTTAATAAGCTGGATGATTTACATGCCAGTGTAACTGCTGTTTCTACTCCAGACATTGCAGATCAAACTCTTCTGCATGATGTACTCTGTGAATTATCATCCCAATTAGTTTGTGATGCTGACGATATTGATTGTCATGAATGGTCATTCATATCAACAATACAGCAGAATGGAGGGGAATATTCGAGGAACATTTTATTGCTAGGAGAAAGAATAATGAAGGAACTGGGCAGTGAGCCAAGTGCTTTTTCCTGGAGTGATCTTGAAGGAAAGTATCCTCAATGGAAATTTTTGTCTGTTTCGTCTCAGAGGATGAGGAGTAGGGTCAAATATACTGATTACATAATAAATGAATCTGAATGTAAAGATCATACAATTATGGGAAAGAGGTCAGCATCAAATGCTTCCAAGAAGAGTAAAGTGTCCAAGGATAATTTTGATCATAATTTGAGGAAGCTGGCCAAGGATAAAGTTGAGCCCAAGAGGAGGAAAGTGTCCAAAGACATTGTTGAAACAGAGGGGAGGGAACAGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGGGTTCAATGGTATTGTTAATTCTGGTGGCAGGAAACTGTCCAAGAAAATTCTTGATTCCAAATATCGGAAACCAAGATTGAGGAACAAGAAGAATTCAAGTGTTTCCAATAGTACTAGTAAATCAAATGGTACAGATGGTTTGTTTAGTGTACTTGGTTCCTCAGGGCGTCCTTTGGCCAATGAAACTACGGGAGAAACTACTACAAACATGCAACTTTCAGAGAAAAGGAAACTGCTTGATGGACCAAATAGTATCAAATTCTTGCCAAAGTCGGATATTTCAGGTCTTTGTGAAATTCTACATTTTCCGTGTTGGCTAGCAGCTTCTTTGTTGAAACATGACATTGATAAGAAGGTTTCACTCACTCTAGCAAAACTGTACTTGAATTTCAATTGCAATGAAGAGGAAGCCACCAATGTCTACTCAGAACTTTGGAAACATGCAAAGACAATTTCTAATTATATACAAAATGGACCATGTGTTGAGTGTATAAATGGTGCTTCAGAAACTAACATGCCCGAGCTGAATGATTTGACCGAGGTGAAGCAGAAGGATTTTCTGGATACTTGTGTTACAAAACTCGTGAAATCTGTCAGAAAAGAACATGATCTTCAAATGAAATCTCCCACAACAGTGGTTTCATGTGACCAGACTTCTACTTATGAAACTTGTTCATTTCCAAAGACACCCGCTAGTTTTCCTGTGAAAGCAATTGCTCTCTCCTCGGAGTTAGGCTCAGAAAATGGCGTCATGGAATCTACACCCTTAATAACTTCAGAAGATTCAGCTCTTGAGCACGGGGGCAATGATGTCAACCCTCATACTGATTATTTGGAAAAACAGAGTCCTATTAGAAGTACAGATATTACACAATCTGATGGCAAAGTTTGTGAAGATCCTCAAATTTTAGAGAATGAATTGGTTGCTATTGAGAATTTTATGAATATGCCTACTCATTCTTTGCAGCTTGACAGTGTTGATGCAAATGCTGTAACTTCTATTGGTTCTGCTGTTCCTGAGGCCAGACAGTGGGGCAGTGTAATGAGTCCTGTATGTGATGAGTCAACTGGACTGAAGTTTGCTGAGACAACCTTTCCAAATATCCAACCATCGGATTCTAATTTGTGGTCGTTGCCTCTGATGGCAATGTCTGATATTCCATCTTTTCCGGAGCCCAATTCAGCTAGTGCTGTCACGCCTCTAGATGATATTTTTAATCATACTCGTGAGGATCATTGTTACATTCACGAGGTTGAAGTAATATTGGAAGCACCAAACAACGTTGTGGAACCAGTTAACTCTTCCTTTGGTTCACCTGTGATACTGCAACCCTTCACAAGTGTGCCCATGAATGAAAATATGACACATGTACCTGACAGCTTTACTATTCCTGGATATATGAACAGTGATTATATTCAACATCACCGTGTGGCATCTGAAATATCCGACGATGTCTATCTAGACTCACTGCTGGATGAAATGGAGATAACAGAAAACAGAAATGAAGAAGCCTTCATAGATCCACTACTAATTGCAATGGAGACAATAGAGAAGGATAAAGAAGAAGCCTTCAAGATACATGAGAAGAAGCTTACGTTTTATTTCTCTGTGAAGCAGAGATTGCAGCTCCGATCTGAATATGAAGAGGAAGTTGAAAAATTGAGTGAAAAGCACAGGATTTTGCTTCAGAATGTTGATACTGAAGTAGCACGCAAAAAAATGGAATTTGAGACACAATGTAAATTAGTGTCAAGCAGTGAGGAATTAGCTAAAGTTTGGATCCATATGCTTGATGGTAGTGGAATTAGCTGA 3993 0.3902 MGRTGFWLREYRNLCVALERSVALVCLTLQETKAFIVESSVLPFGDSPGLYNQYLSYVNKLRMCWYKGQNALIVDDQIDQERIIKVILFVLSLNCNSQRPFLIISTSTALSVWETEFLHLAPSANLVVYKGNRDVRSGIRALEFFSEENDILFQILLSSSDIVVEDLHELRCITWEAIIIDECQQSRISGHLDHIKILKTEMKLLLVSGQIKEDRHDYIKLLSFLKSAHHEPSIAPIETSFSASISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSMLLSNLILLCSGQKSDAVGALHELIISTRKCCDHPYLLEPALHNSVAKGLPVEEHLDIGIKASGKLLLLEKILLEAKSRGLRVLILFQILEDSVSSFHFEKLQSSCGSGSIGDILDDVLCQRFGIDCYVRYDRAYTPKTKEAALDTFNDRDSGKFVFLMENRACLPSVKLSSVDIVILFDSDFDPHNDLRGLQRMSISTQLKQLTVFRLYSYCTVEERILMLAKEGISLDSNVRLISHSISHTLLKWGTSHLFNKLDDLHASVTAVSTPDIADQTLLHDVLCELSSQLVCDADDIDCHEWSFISTIQQNGGEYSRNILLLGERIMKELGSEPSAFSWSDLEGKYPQWKFLSVSSQRMRSRVKYTDYIINESECKDHTIMGKRSASNASKKSKVSKDNFDHNLRKLAKDKVEPKRRKVSKDIVETEGREQSNHAIDPKTRKGFNGIVNSGGRKLSKKILDSKYRKPRLRNKKNSSVSNSTSKSNGTDGLFSVLGSSGRPLANETTGETTTNMQLSEKRKLLDGPNSIKFLPKSDISGLCEILHFPCWLAASLLKHDIDKKVSLTLAKLYLNFNCNEEEATNVYSELWKHAKTISNYIQNGPCVECINGASETNMPELNDLTEVKQKDFLDTCVTKLVKSVRKEHDLQMKSPTTVVSCDQTSTYETCSFPKTPASFPVKAIALSSELGSENGVMESTPLITSEDSALEHGGNDVNPHTDYLEKQSPIRSTDITQSDGKVCEDPQILENELVAIENFMNMPTHSLQLDSVDANAVTSIGSAVPEARQWGSVMSPVCDESTGLKFAETTFPNIQPSDSNLWSLPLMAMSDIPSFPEPNSASAVTPLDDIFNHTREDHCYIHEVEVILEAPNNVVEPVNSSFGSPVILQPFTSVPMNENMTHVPDSFTIPGYMNSDYIQHHRVASEISDDVYLDSLLDEMEITENRNEEAFIDPLLIAMETIEKDKEEAFKIHEKKLTFYFSVKQRLQLRSEYEEEVEKLSEKHRILLQNVDTEVARKKMEFETQCKLVSSSEELAKVWIHMLDGSGIS 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02513 1330 MobiDBLite consensus disorder prediction 757 773 - -
Vimu6g02513 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 519 IPR027417 -
Vimu6g02513 1330 Coils Coil 1264 1291 - -
Vimu6g02513 1330 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 50 941 - -
Vimu6g02513 1330 Coils Coil 1214 1234 - -
Vimu6g02513 1330 Gene3D - 267 516 IPR027417 -
Vimu6g02513 1330 MobiDBLite consensus disorder prediction 992 1020 - -
Vimu6g02513 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 227 IPR027417 -
Vimu6g02513 1330 MobiDBLite consensus disorder prediction 678 721 - -
Vimu6g02513 1330 Gene3D - 51 266 IPR038718 -
Vimu6g02513 1330 Gene3D - 1232 1322 - -
Vimu6g02513 1330 MobiDBLite consensus disorder prediction 1002 1020 - -
Vimu6g02513 1330 MobiDBLite consensus disorder prediction 665 773 - -
Vimu6g02513 1330 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 229 IPR014001 -
Vimu6g02513 1330 Pfam SNF2-related domain 84 323 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02513 Vimu-Chr6 21847794 21866573 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu6g02513 SNF2_N 1.7e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02513 - K11643 gmx:100813574 1670.6