Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g02513 | TTGGGGAGGACGGGCTTTTGGTTAAGAGAGTACAGGAACCTTTGTGTTGCTCTAGAGAGGAGCGTAGCTCTGGTTTGTTTGACACTGCAGGAGACAAAAGCTTTTATTGTCGAATCGTCAGTGTTGCCGTTTGGAGATTCACCAGGACTTTATAACCAGTATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGTACAAAGGCCAAAATGCTCTGATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAAGTGATTTTGTTTGTATTATCTTTGAATTGCAATAGCCAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTATGGGAAACAGAGTTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAATAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTTTAGTGAAGAAAATGATATATTATTTCAAATACTGTTGTCATCTTCTGATATTGTTGTTGAGGACTTACATGAACTAAGATGCATTACATGGGAAGCGATAATAATTGATGAATGCCAGCAATCCAGAATTTCAGGACACTTGGACCATATCAAGATTTTAAAAACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGACATGATTATATCAAACTGCTTTCATTCCTCAAGTCTGCACATCATGAACCAAGTATTGCTCCAATAGAAACTTCTTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTCAAATGCAAATCTGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAACAGTATTGTTCAATGCTGCTTTCAAACTTAATTTTGTTATGCTCAGGCCAGAAGTCTGATGCAGTTGGTGCGCTCCATGAGCTTATTATCTCAACAAGGAAGTGCTGTGACCACCCTTATCTCCTGGAGCCGGCACTGCATAATTCTGTTGCTAAGGGTCTACCTGTTGAAGAACATTTAGATATTGGTATAAAAGCAAGCGGAAAACTGCTACTTCTTGAAAAAATCCTTTTGGAAGCAAAAAGTCGTGGGTTAAGGGTGTTAATATTATTCCAGATTCTTGAGGATTCAGTTAGCTCTTTTCATTTCGAAAAACTACAGTCATCTTGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTATAGATTGCTATGTGCGATATGATAGAGCTTATACCCCTAAAACAAAGGAAGCTGCTTTAGACACATTTAATGATCGAGACAGTGGTAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCCCTAGTGTTAAGCTTTCTTCAGTGGACATTGTTATATTGTTTGACAGTGATTTTGACCCTCACAATGACCTAAGAGGTTTGCAAAGGATGTCTATCAGCACACAGTTGAAACAATTAACCGTTTTCAGATTGTACTCATATTGCACTGTTGAAGAAAGGATTTTAATGCTTGCAAAGGAGGGTATATCTCTTGACAGTAACGTGCGGTTGATTAGTCATAGTATTTCTCACACTCTTCTAAAATGGGGCACCTCTCATCTGTTTAATAAGCTGGATGATTTACATGCCAGTGTAACTGCTGTTTCTACTCCAGACATTGCAGATCAAACTCTTCTGCATGATGTACTCTGTGAATTATCATCCCAATTAGTTTGTGATGCTGACGATATTGATTGTCATGAATGGTCATTCATATCAACAATACAGCAGAATGGAGGGGAATATTCGAGGAACATTTTATTGCTAGGAGAAAGAATAATGAAGGAACTGGGCAGTGAGCCAAGTGCTTTTTCCTGGAGTGATCTTGAAGGAAAGTATCCTCAATGGAAATTTTTGTCTGTTTCGTCTCAGAGGATGAGGAGTAGGGTCAAATATACTGATTACATAATAAATGAATCTGAATGTAAAGATCATACAATTATGGGAAAGAGGTCAGCATCAAATGCTTCCAAGAAGAGTAAAGTGTCCAAGGATAATTTTGATCATAATTTGAGGAAGCTGGCCAAGGATAAAGTTGAGCCCAAGAGGAGGAAAGTGTCCAAAGACATTGTTGAAACAGAGGGGAGGGAACAGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGGGTTCAATGGTATTGTTAATTCTGGTGGCAGGAAACTGTCCAAGAAAATTCTTGATTCCAAATATCGGAAACCAAGATTGAGGAACAAGAAGAATTCAAGTGTTTCCAATAGTACTAGTAAATCAAATGGTACAGATGGTTTGTTTAGTGTACTTGGTTCCTCAGGGCGTCCTTTGGCCAATGAAACTACGGGAGAAACTACTACAAACATGCAACTTTCAGAGAAAAGGAAACTGCTTGATGGACCAAATAGTATCAAATTCTTGCCAAAGTCGGATATTTCAGGTCTTTGTGAAATTCTACATTTTCCGTGTTGGCTAGCAGCTTCTTTGTTGAAACATGACATTGATAAGAAGGTTTCACTCACTCTAGCAAAACTGTACTTGAATTTCAATTGCAATGAAGAGGAAGCCACCAATGTCTACTCAGAACTTTGGAAACATGCAAAGACAATTTCTAATTATATACAAAATGGACCATGTGTTGAGTGTATAAATGGTGCTTCAGAAACTAACATGCCCGAGCTGAATGATTTGACCGAGGTGAAGCAGAAGGATTTTCTGGATACTTGTGTTACAAAACTCGTGAAATCTGTCAGAAAAGAACATGATCTTCAAATGAAATCTCCCACAACAGTGGTTTCATGTGACCAGACTTCTACTTATGAAACTTGTTCATTTCCAAAGACACCCGCTAGTTTTCCTGTGAAAGCAATTGCTCTCTCCTCGGAGTTAGGCTCAGAAAATGGCGTCATGGAATCTACACCCTTAATAACTTCAGAAGATTCAGCTCTTGAGCACGGGGGCAATGATGTCAACCCTCATACTGATTATTTGGAAAAACAGAGTCCTATTAGAAGTACAGATATTACACAATCTGATGGCAAAGTTTGTGAAGATCCTCAAATTTTAGAGAATGAATTGGTTGCTATTGAGAATTTTATGAATATGCCTACTCATTCTTTGCAGCTTGACAGTGTTGATGCAAATGCTGTAACTTCTATTGGTTCTGCTGTTCCTGAGGCCAGACAGTGGGGCAGTGTAATGAGTCCTGTATGTGATGAGTCAACTGGACTGAAGTTTGCTGAGACAACCTTTCCAAATATCCAACCATCGGATTCTAATTTGTGGTCGTTGCCTCTGATGGCAATGTCTGATATTCCATCTTTTCCGGAGCCCAATTCAGCTAGTGCTGTCACGCCTCTAGATGATATTTTTAATCATACTCGTGAGGATCATTGTTACATTCACGAGGTTGAAGTAATATTGGAAGCACCAAACAACGTTGTGGAACCAGTTAACTCTTCCTTTGGTTCACCTGTGATACTGCAACCCTTCACAAGTGTGCCCATGAATGAAAATATGACACATGTACCTGACAGCTTTACTATTCCTGGATATATGAACAGTGATTATATTCAACATCACCGTGTGGCATCTGAAATATCCGACGATGTCTATCTAGACTCACTGCTGGATGAAATGGAGATAACAGAAAACAGAAATGAAGAAGCCTTCATAGATCCACTACTAATTGCAATGGAGACAATAGAGAAGGATAAAGAAGAAGCCTTCAAGATACATGAGAAGAAGCTTACGTTTTATTTCTCTGTGAAGCAGAGATTGCAGCTCCGATCTGAATATGAAGAGGAAGTTGAAAAATTGAGTGAAAAGCACAGGATTTTGCTTCAGAATGTTGATACTGAAGTAGCACGCAAAAAAATGGAATTTGAGACACAATGTAAATTAGTGTCAAGCAGTGAGGAATTAGCTAAAGTTTGGATCCATATGCTTGATGGTAGTGGAATTAGCTGA | 3993 | 0.3902 | MGRTGFWLREYRNLCVALERSVALVCLTLQETKAFIVESSVLPFGDSPGLYNQYLSYVNKLRMCWYKGQNALIVDDQIDQERIIKVILFVLSLNCNSQRPFLIISTSTALSVWETEFLHLAPSANLVVYKGNRDVRSGIRALEFFSEENDILFQILLSSSDIVVEDLHELRCITWEAIIIDECQQSRISGHLDHIKILKTEMKLLLVSGQIKEDRHDYIKLLSFLKSAHHEPSIAPIETSFSASISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSMLLSNLILLCSGQKSDAVGALHELIISTRKCCDHPYLLEPALHNSVAKGLPVEEHLDIGIKASGKLLLLEKILLEAKSRGLRVLILFQILEDSVSSFHFEKLQSSCGSGSIGDILDDVLCQRFGIDCYVRYDRAYTPKTKEAALDTFNDRDSGKFVFLMENRACLPSVKLSSVDIVILFDSDFDPHNDLRGLQRMSISTQLKQLTVFRLYSYCTVEERILMLAKEGISLDSNVRLISHSISHTLLKWGTSHLFNKLDDLHASVTAVSTPDIADQTLLHDVLCELSSQLVCDADDIDCHEWSFISTIQQNGGEYSRNILLLGERIMKELGSEPSAFSWSDLEGKYPQWKFLSVSSQRMRSRVKYTDYIINESECKDHTIMGKRSASNASKKSKVSKDNFDHNLRKLAKDKVEPKRRKVSKDIVETEGREQSNHAIDPKTRKGFNGIVNSGGRKLSKKILDSKYRKPRLRNKKNSSVSNSTSKSNGTDGLFSVLGSSGRPLANETTGETTTNMQLSEKRKLLDGPNSIKFLPKSDISGLCEILHFPCWLAASLLKHDIDKKVSLTLAKLYLNFNCNEEEATNVYSELWKHAKTISNYIQNGPCVECINGASETNMPELNDLTEVKQKDFLDTCVTKLVKSVRKEHDLQMKSPTTVVSCDQTSTYETCSFPKTPASFPVKAIALSSELGSENGVMESTPLITSEDSALEHGGNDVNPHTDYLEKQSPIRSTDITQSDGKVCEDPQILENELVAIENFMNMPTHSLQLDSVDANAVTSIGSAVPEARQWGSVMSPVCDESTGLKFAETTFPNIQPSDSNLWSLPLMAMSDIPSFPEPNSASAVTPLDDIFNHTREDHCYIHEVEVILEAPNNVVEPVNSSFGSPVILQPFTSVPMNENMTHVPDSFTIPGYMNSDYIQHHRVASEISDDVYLDSLLDEMEITENRNEEAFIDPLLIAMETIEKDKEEAFKIHEKKLTFYFSVKQRLQLRSEYEEEVEKLSEKHRILLQNVDTEVARKKMEFETQCKLVSSSEELAKVWIHMLDGSGIS | 1330 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g02513 | 1330 | MobiDBLite | consensus disorder prediction | 757 | 773 | - | - | |
Vimu6g02513 | 1330 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 268 | 519 | IPR027417 | - | |
Vimu6g02513 | 1330 | Coils | Coil | 1264 | 1291 | - | - | |
Vimu6g02513 | 1330 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 50 | 941 | - | - | |
Vimu6g02513 | 1330 | Coils | Coil | 1214 | 1234 | - | - | |
Vimu6g02513 | 1330 | Gene3D | - | 267 | 516 | IPR027417 | - | |
Vimu6g02513 | 1330 | MobiDBLite | consensus disorder prediction | 992 | 1020 | - | - | |
Vimu6g02513 | 1330 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 95 | 227 | IPR027417 | - | |
Vimu6g02513 | 1330 | MobiDBLite | consensus disorder prediction | 678 | 721 | - | - | |
Vimu6g02513 | 1330 | Gene3D | - | 51 | 266 | IPR038718 | - | |
Vimu6g02513 | 1330 | Gene3D | - | 1232 | 1322 | - | - | |
Vimu6g02513 | 1330 | MobiDBLite | consensus disorder prediction | 1002 | 1020 | - | - | |
Vimu6g02513 | 1330 | MobiDBLite | consensus disorder prediction | 665 | 773 | - | - | |
Vimu6g02513 | 1330 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 62 | 229 | IPR014001 | - | |
Vimu6g02513 | 1330 | Pfam | SNF2-related domain | 84 | 323 | IPR000330 | GO:0005524|GO:0140658 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g02513 | Vimu-Chr6 | 21847794 | 21866573 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Vimu6g02513 | SNF2_N | 1.7e-08 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g02513 | - | K11643 | gmx:100813574 | 1670.6 |