Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02504 ATGAATATCGAAATCTCAACATTCTCTTCTGAAAATGAAAATGCAGTCCAGTCAGCAGCCATGAAGTGTTTTACATTCTCCTATGGAGAGAAAAAAGAAGAGCCAAAAGGCTTGCGGTCAACATCGGGCCGGTCAGAGAATTCCACGAATGGTGATATTAGAAGATCTGGTTCTGAGTTAAATTCTCAGGAAGTTTCAGACAATGGCAGCACGGAATCTCTCAGGAGGAATGCAATACCCAGTTTGTCCCAGAGGTCCAGCAACCTCAGAGTGTTTACTGTTTCTGAACTGAAATCAGCCACAAGGAATTTCAGTCGCTCTGTTATGATTGGAGAGGGCGGCTTTGGGTGTGTCTACCTGGGATTGATTAAAAGTGTGGAGGTCCCCTCTGGAAGAATTGAAGTTGCTGTTAAACAGCTTAGTAAAAGGGGAATGCAGGGGCACAGGGAATGGGTGACAGAAGTGAATGTTCTGGGTGTTGTTGAGCATCCGAATCTTGTGAAACTAGTGGGTTATTGTGCAGAAGACGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATACATGCCTAACAGAAGTGTGGAACACCATTTATCCCATCGATCAGAGGCTCCTCTCTCATGGAGTAGGAGATTGAAAATAGCACGAGATGCAGCTCGTGGATTAACATACCTGCATGAAGAAATGGGTTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTTTGGATGAACAATGGAATGCAAAACTGTCAGACTTTGGGTTGGCAAGGCTGGGACCATCGGATGGACTGACTCATGTCTCAACTGCGGTTGTGGGAACAATGGGATATGCATCTCCAGAATATGTTCAAACTGGACGTCTAACATCAAAGAATGACGTGTGGAGCTACGGTGTCTTCCTTTATGAACTCATCACCGGTAGGCGTCCTATAGATCGTAATCGCCCCAGGGGTGAGCAGAAGCTCTTGGAATGGATAAGGCCATACCTCTCAGATGGGAGGAAATTTCAACTAATATTAGACCCAAGACTTGATAAGAAACAAATCTTCAAATCAGCCCATAGACTTTCTATGATAGCAAACCGATGCTTGGTAAAAAATCCAAAGAATCGGCCAAAGATGAGTGAGGTATTGGAAATGGTGAATGGGATGTTAGAATCTTCCTCATCCTGTTCCAGTCCACCATTGCCCTTGAGGAGTGTGGCAAGAGTGGAAACTTCCCAGGATACTGAAACAAATAACAAGAAACGGACCATGGATCAGAAGCCTGGAGAAAGTAATTGGTTTGCTAGGATGTGGAGACCAAAGCTA 1323 0.4392 MNIEISTFSSENENAVQSAAMKCFTFSYGEKKEEPKGLRSTSGRSENSTNGDIRRSGSELNSQEVSDNGSTESLRRNAIPSLSQRSSNLRVFTVSELKSATRNFSRSVMIGEGGFGCVYLGLIKSVEVPSGRIEVAVKQLSKRGMQGHREWVTEVNVLGVVEHPNLVKLVGYCAEDDERGIQRLLIYEYMPNRSVEHHLSHRSEAPLSWSRRLKIARDAARGLTYLHEEMGFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYASPEYVQTGRLTSKNDVWSYGVFLYELITGRRPIDRNRPRGEQKLLEWIRPYLSDGRKFQLILDPRLDKKQIFKSAHRLSMIANRCLVKNPKNRPKMSEVLEMVNGMLESSSSCSSPPLPLRSVARVETSQDTETNNKKRTMDQKPGESNWFARMWRPKL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02504 441 PANTHER OS01G0588500 PROTEIN-RELATED 59 386 - -
Vimu6g02504 441 MobiDBLite consensus disorder prediction 41 79 - -
Vimu6g02504 441 Gene3D Phosphorylase Kinase; domain 1 84 189 - -
Vimu6g02504 441 Pfam Protein tyrosine and serine/threonine kinase 109 383 IPR001245 GO:0004672|GO:0006468
Vimu6g02504 441 FunFam Serine/threonine-protein kinase PCRK2 190 399 - -
Vimu6g02504 441 SUPERFAMILY Protein kinase-like (PK-like) 81 385 IPR011009 -
Vimu6g02504 441 CDD STKc_IRAK 110 388 - -
Vimu6g02504 441 FunFam Serine/threonine-protein kinase BIK1 71 189 - -
Vimu6g02504 441 Gene3D Transferase(Phosphotransferase) domain 1 190 397 - -
Vimu6g02504 441 ProSiteProfiles Protein kinase domain profile. 104 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02504 441 MobiDBLite consensus disorder prediction 406 431 - -
Vimu6g02504 441 MobiDBLite consensus disorder prediction 31 79 - -
Vimu6g02504 441 ProSitePatterns Protein kinases ATP-binding region signature. 110 138 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02504 Vimu-Chr6 21796088 21799760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02504 21 401 Glycoside Hydrolase AT3G07070 40.452 1.80e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu6g02504 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02504 - - gsj:114400704 758.829