Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g02494 | ATGTCAAAAGATTCTGAGGAGATAAAAACCATAGAGCAGTGGAAATGGTCAGAAATGCAAGGCCTTGAGCTTGTTCCTGATGCTGCAACTTCACAACTACAACAACAACAAGACCAAGTTCCAAGGGAAATGGAGACTGCTCGTGAACAACCCAACAAAGATGCTGCTGCTTCTGCTGCGGTTACTATGAACGGTGGTTCCATTGGTGGGGAGAAGGCAGAGAGTGTTCCCTCTGTTGGCTTCGGAGAGCTTTTCAGATTCGCTGATGGGTTGGATTATGTTCTCATGGGAATTGGAACGGTTGGAGCAGTTGTGCACGGCTGTTCTCTGCCTATCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGATGTGGACAAGATGACTCAGGAAGTGGTTAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCAATATGGGCATCATCCTGGGCAGAGATTTCGTGTTGGATGTGGAGTGGGGAGCGTCAATCCACCAAGATGAGAATCAAGTATCTGGAGACTGCGTTGAACCAGGACATTCAGTTCTTCGACACTGATGTGCGGACTTCCGATGTTGTTTTCGCCATCAACAGCGATGCTGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCTACGTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTCTTGTCACTCTTGCTGTTGTTCCTATGATAGCTGTGATTGGAGGCATTCACACCACCACCTTGGCCAAGCTCTCTGGCAAGAGCCAAGAAGCTCTCGCTCAAGCTGGCAACATAGTAGAACAGACGGTTGCACAAATCCGAGTGGTTCTGGCCTTCGTTGGGGAGTCCAGAGCATTACAGGCCTATTCATCAGCCTTGAGGGTTGCACAGAAGCTTGGTTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGGGCCACCTACTTTGTTGTTTTCTGCTGTTATGCGCTTCTGCTGTGGTATGGAGGTTATCTTGTTAGGCACCATGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATCGGTGGATTGGGTTTGGGGCAATCTGCACCAAGCATGGCTGCTTTTACGAAGGCCAGAGTAGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCGAGTATTGATCGAAATAGCGAATCTGGCATTGAACTAGAGACTGTTACTGGACTTGTGGAACTGAAAAATGTAGACTTTTCTTACCCATCTAGGCCAGAGGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCTGCGGGCAAAACCATAGCTCTCGTGGGTAGCAGCGGCTCTGGTAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTACGACCCAACTTCAGGACAAGTTCTATTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGTTGAGGCAGCAGATAGGATTAGTGAGCCAAGAGCCAGCTTTGTTTGCAACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCGCATTCCTTCATCATTAAACTTCCTGAAGGCTATGAAACCCAGGTTAGCCATCTATGTTTTATGAAAATGGCTTCAGTAATTGCGTGTGCAATGATGATTGTGATGGCCCTTTTTAGCCAGTCCACATCATTGGATTTTTTAATCTTTGGTGTGGAACTACAGAAGAAGCATTTGATTGTTTCCACGGAAGTGCATGTTCATGCCTTGCATCTCAAAAAGGCAAAGAGGGTAACATGCTTCTGTCAACGTGCATGTTCATTCTTAAATAAGGACGTGACAACCGACCAACCTGGAAATACTCGGGATATAACAAAAAATGAAGACCATGAAAATTCTTCTCAATTAGACTCCACAAGAGTTGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAAGCAACAAGTGCATTGGACTCAGAGTCAGAAAAACTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTCATTGCCCATCGCCTCTCCACAATTCGCAAAGCTGATCTTGTTGCTGTTCTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTGTTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAGTAATGCCAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAACTCTGTCAGCTCACCAATAATTGCTAGGAATTCTTCTTACGGACGGTCACCATACTCGCGTAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTAGATGCATCACATTCAAATTACAGGCTTGAAAAGCTGGCTTTCAAGGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGATCTGTTATTTGTGGATCTCTCAGTGCCTTCTTTGCGTATGTTCTTAGTGCTGTCCTCAGTGTGTATTACAATCCAGACCACAGATACATGATCCGTGAAATAGAAAAGTACTGTTACTTGTTGATTGGACTTTCATCAACCGCACTTCTCTTCAACACACTGCAACATTTCTTCTGGGACATTGTTGGGGAAAATCTTACCAAACGTGTGAGGGAGAAAATGCTTACGGCGGTGCTAAAAAATGAAATGGCGTGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCCGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAATACTGCACTTATGCTAGTTGCCTGTACTGCAGGCTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCATAGCTGTCTTCCCTATTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCAAAGGCTACACAACTTGCAGGAGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAAGAAAAATTGTGGGTCTTTTCACCTCCAATCTGCAGGCTCCACTAAAGCGTTGCTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGTGTAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCTGCAAACGGTGCTGCTGAAACATTAACACTTGCTCCTGACTTTATCAAAGGAGGCCGAGCCATGAGGTCAGTCTTTGAACTCCTTGACCGTAGGACTGAAATTGAACCCGATGATCAAGATGCCACTCCTTTTCCTGATCGTCTCCGTGGTGAAGTTGAACTTAAGCATGTAGATTTTTTCTATCCAACTCGCCCTGACATGCCAGTTTTTCGAGACCTCAGTCTTCGTGCAAGGGCCGGCAAAACTCTCGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTTATACAGAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAGGACATAAGGAAATACAATCTGAAGTCCTTAAGAAGGCACATTTCAGTGGTACCTCAGGAGCCATGCTTGTTTGCTACTACAATTTATGAAAACATTGCTTATGGGCATGAGTCAGCCAGTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGCTTTGCCTGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAGCTATCCGGAGGACAAAAGCAAAGAATAGCAGTTGCTCGAGCTTTTGTGAGGAAAGCTGAGCTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCTGAGAGGTCGGTTCAGGAGGCTCTAGACCGTGCCTCCTCTGGAAAAACAACCATCATTGTTGCGCACAGGCTATCAACTATAAGGAATGCCAGTCTGATTGCTGTGATCGATGATGGCAAAGTGGCTGAGCAAGGCTCTCATTCACAGTTGTTGAAAAATCACCCCGATGGGATTTATGCACGCATGATTCAGTTGCAAAGGTTCACACACACCCAAGTCATTGGAATGGCCTCAGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG | 4341 | 0.4536 | MSKDSEEIKTIEQWKWSEMQGLELVPDAATSQLQQQQDQVPREMETAREQPNKDAAASAAVTMNGGSIGGEKAESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPIFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLETALNQDIQFFDTDVRTSDVVFAINSDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALAQAGNIVEQTVAQIRVVLAFVGESRALQAYSSALRVAQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDRNSESGIELETVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGYETQVSHLCFMKMASVIACAMMIVMALFSQSTSLDFLIFGVELQKKHLIVSTEVHVHALHLKKAKRVTCFCQRACSFLNKDVTTDQPGNTRDITKNEDHENSSQLDSTRVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHSNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPIVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSERKIVGLFTSNLQAPLKRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDQDATPFPDRLRGEVELKHVDFFYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESASEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNASLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHTQVIGMASGSSSSTRPKDDEREG | 1446 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g02494 | 1446 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 420 | 761 | IPR003439 | GO:0005524 | |
Vimu6g02494 | 1446 | Pfam | ABC transporter | 438 | 536 | IPR003439 | GO:0005524 | |
Vimu6g02494 | 1446 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 96 | 393 | - | - | |
Vimu6g02494 | 1446 | Pfam | ABC transporter | 1199 | 1347 | IPR003439 | GO:0005524 | |
Vimu6g02494 | 1446 | CDD | ABC_MTABC3_MDL1_MDL2 | 1180 | 1419 | - | - | |
Vimu6g02494 | 1446 | Gene3D | - | 655 | 765 | IPR027417 | - | |
Vimu6g02494 | 1446 | Gene3D | - | 1169 | 1420 | IPR027417 | - | |
Vimu6g02494 | 1446 | Gene3D | - | 410 | 552 | IPR027417 | - | |
Vimu6g02494 | 1446 | FunFam | ABC transporter B family member 1 | 1170 | 1420 | - | - | |
Vimu6g02494 | 1446 | PANTHER | ABC TRANSPORTER B FAMILY | 69 | 908 | IPR039421 | - | |
Vimu6g02494 | 1446 | Gene3D | ABC transporter type 1, transmembrane domain | 83 | 409 | IPR036640 | GO:0005524|GO:0016020 | |
Vimu6g02494 | 1446 | Gene3D | ABC transporter type 1, transmembrane domain | 836 | 1145 | IPR036640 | GO:0005524|GO:0016020 | |
Vimu6g02494 | 1446 | Gene3D | ABC transporter type 1, transmembrane domain | 766 | 778 | IPR036640 | GO:0005524|GO:0016020 | |
Vimu6g02494 | 1446 | MobiDBLite | consensus disorder prediction | 1427 | 1446 | - | - | |
Vimu6g02494 | 1446 | FunFam | ABC transporter B family member 19 | 1146 | 1168 | - | - | |
Vimu6g02494 | 1446 | MobiDBLite | consensus disorder prediction | 27 | 41 | - | - | |
Vimu6g02494 | 1446 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 98 | 385 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vimu6g02494 | 1446 | FunFam | ABC transporter B family member 1 | 836 | 1145 | - | - | |
Vimu6g02494 | 1446 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 857 | 1144 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vimu6g02494 | 1446 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 414 | 768 | IPR027417 | - | |
Vimu6g02494 | 1446 | MobiDBLite | consensus disorder prediction | 638 | 653 | - | - | |
Vimu6g02494 | 1446 | MobiDBLite | consensus disorder prediction | 27 | 59 | - | - | |
Vimu6g02494 | 1446 | ProSitePatterns | ABC transporters family signature. | 664 | 678 | IPR017871 | GO:0005524|GO:0016887 | |
Vimu6g02494 | 1446 | ProSitePatterns | ABC transporters family signature. | 1319 | 1333 | IPR017871 | GO:0005524|GO:0016887 | |
Vimu6g02494 | 1446 | FunFam | ABC transporter B family member 1 | 83 | 418 | - | - | |
Vimu6g02494 | 1446 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1171 | 1419 | IPR027417 | - | |
Vimu6g02494 | 1446 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 846 | 1162 | - | - | |
Vimu6g02494 | 1446 | Pfam | ABC transporter | 610 | 692 | IPR003439 | GO:0005524 | |
Vimu6g02494 | 1446 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1182 | 1416 | IPR003439 | GO:0005524 | |
Vimu6g02494 | 1446 | SUPERFAMILY | ABC transporter transmembrane region | 844 | 1164 | IPR036640 | GO:0005524|GO:0016020 | |
Vimu6g02494 | 1446 | MobiDBLite | consensus disorder prediction | 633 | 658 | - | - | |
Vimu6g02494 | 1446 | SMART | AAA_5 | 1207 | 1399 | IPR003593 | GO:0016887 | |
Vimu6g02494 | 1446 | SMART | AAA_5 | 447 | 738 | IPR003593 | GO:0016887 | |
Vimu6g02494 | 1446 | Pfam | ABC transporter transmembrane region | 97 | 370 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vimu6g02494 | 1446 | Pfam | ABC transporter transmembrane region | 858 | 1127 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vimu6g02494 | 1446 | SUPERFAMILY | ABC transporter transmembrane region | 84 | 404 | IPR036640 | GO:0005524|GO:0016020 | |
Vimu6g02494 | 1446 | CDD | ABC_MTABC3_MDL1_MDL2 | 420 | 764 | - | - | |
Vimu6g02494 | 1446 | Gene3D | ABC transporter type 1, transmembrane domain | 1146 | 1423 | IPR036640 | GO:0005524|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g02494 | Vimu-Chr6 | 21699124 | 21705035 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g02494 | 71 | 552 | Calmodulin-binding Proteins | AT2G36910 | 88.382 | 0.0 | 878 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g02494 | K05658 | - | gmx:100814667 | 1458.35 |