Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02494 ATGTCAAAAGATTCTGAGGAGATAAAAACCATAGAGCAGTGGAAATGGTCAGAAATGCAAGGCCTTGAGCTTGTTCCTGATGCTGCAACTTCACAACTACAACAACAACAAGACCAAGTTCCAAGGGAAATGGAGACTGCTCGTGAACAACCCAACAAAGATGCTGCTGCTTCTGCTGCGGTTACTATGAACGGTGGTTCCATTGGTGGGGAGAAGGCAGAGAGTGTTCCCTCTGTTGGCTTCGGAGAGCTTTTCAGATTCGCTGATGGGTTGGATTATGTTCTCATGGGAATTGGAACGGTTGGAGCAGTTGTGCACGGCTGTTCTCTGCCTATCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGATGTGGACAAGATGACTCAGGAAGTGGTTAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCAATATGGGCATCATCCTGGGCAGAGATTTCGTGTTGGATGTGGAGTGGGGAGCGTCAATCCACCAAGATGAGAATCAAGTATCTGGAGACTGCGTTGAACCAGGACATTCAGTTCTTCGACACTGATGTGCGGACTTCCGATGTTGTTTTCGCCATCAACAGCGATGCTGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCTACGTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTCTTGTCACTCTTGCTGTTGTTCCTATGATAGCTGTGATTGGAGGCATTCACACCACCACCTTGGCCAAGCTCTCTGGCAAGAGCCAAGAAGCTCTCGCTCAAGCTGGCAACATAGTAGAACAGACGGTTGCACAAATCCGAGTGGTTCTGGCCTTCGTTGGGGAGTCCAGAGCATTACAGGCCTATTCATCAGCCTTGAGGGTTGCACAGAAGCTTGGTTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGGGCCACCTACTTTGTTGTTTTCTGCTGTTATGCGCTTCTGCTGTGGTATGGAGGTTATCTTGTTAGGCACCATGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATCGGTGGATTGGGTTTGGGGCAATCTGCACCAAGCATGGCTGCTTTTACGAAGGCCAGAGTAGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCGAGTATTGATCGAAATAGCGAATCTGGCATTGAACTAGAGACTGTTACTGGACTTGTGGAACTGAAAAATGTAGACTTTTCTTACCCATCTAGGCCAGAGGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCTGCGGGCAAAACCATAGCTCTCGTGGGTAGCAGCGGCTCTGGTAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTACGACCCAACTTCAGGACAAGTTCTATTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGTTGAGGCAGCAGATAGGATTAGTGAGCCAAGAGCCAGCTTTGTTTGCAACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCGCATTCCTTCATCATTAAACTTCCTGAAGGCTATGAAACCCAGGTTAGCCATCTATGTTTTATGAAAATGGCTTCAGTAATTGCGTGTGCAATGATGATTGTGATGGCCCTTTTTAGCCAGTCCACATCATTGGATTTTTTAATCTTTGGTGTGGAACTACAGAAGAAGCATTTGATTGTTTCCACGGAAGTGCATGTTCATGCCTTGCATCTCAAAAAGGCAAAGAGGGTAACATGCTTCTGTCAACGTGCATGTTCATTCTTAAATAAGGACGTGACAACCGACCAACCTGGAAATACTCGGGATATAACAAAAAATGAAGACCATGAAAATTCTTCTCAATTAGACTCCACAAGAGTTGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAAGCAACAAGTGCATTGGACTCAGAGTCAGAAAAACTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTCATTGCCCATCGCCTCTCCACAATTCGCAAAGCTGATCTTGTTGCTGTTCTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTGTTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAGTAATGCCAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAACTCTGTCAGCTCACCAATAATTGCTAGGAATTCTTCTTACGGACGGTCACCATACTCGCGTAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTAGATGCATCACATTCAAATTACAGGCTTGAAAAGCTGGCTTTCAAGGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGATCTGTTATTTGTGGATCTCTCAGTGCCTTCTTTGCGTATGTTCTTAGTGCTGTCCTCAGTGTGTATTACAATCCAGACCACAGATACATGATCCGTGAAATAGAAAAGTACTGTTACTTGTTGATTGGACTTTCATCAACCGCACTTCTCTTCAACACACTGCAACATTTCTTCTGGGACATTGTTGGGGAAAATCTTACCAAACGTGTGAGGGAGAAAATGCTTACGGCGGTGCTAAAAAATGAAATGGCGTGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCCGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAATACTGCACTTATGCTAGTTGCCTGTACTGCAGGCTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCATAGCTGTCTTCCCTATTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCAAAGGCTACACAACTTGCAGGAGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAAGAAAAATTGTGGGTCTTTTCACCTCCAATCTGCAGGCTCCACTAAAGCGTTGCTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGTGTAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCTGCAAACGGTGCTGCTGAAACATTAACACTTGCTCCTGACTTTATCAAAGGAGGCCGAGCCATGAGGTCAGTCTTTGAACTCCTTGACCGTAGGACTGAAATTGAACCCGATGATCAAGATGCCACTCCTTTTCCTGATCGTCTCCGTGGTGAAGTTGAACTTAAGCATGTAGATTTTTTCTATCCAACTCGCCCTGACATGCCAGTTTTTCGAGACCTCAGTCTTCGTGCAAGGGCCGGCAAAACTCTCGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTTATACAGAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAGGACATAAGGAAATACAATCTGAAGTCCTTAAGAAGGCACATTTCAGTGGTACCTCAGGAGCCATGCTTGTTTGCTACTACAATTTATGAAAACATTGCTTATGGGCATGAGTCAGCCAGTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGCTTTGCCTGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAGCTATCCGGAGGACAAAAGCAAAGAATAGCAGTTGCTCGAGCTTTTGTGAGGAAAGCTGAGCTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCTGAGAGGTCGGTTCAGGAGGCTCTAGACCGTGCCTCCTCTGGAAAAACAACCATCATTGTTGCGCACAGGCTATCAACTATAAGGAATGCCAGTCTGATTGCTGTGATCGATGATGGCAAAGTGGCTGAGCAAGGCTCTCATTCACAGTTGTTGAAAAATCACCCCGATGGGATTTATGCACGCATGATTCAGTTGCAAAGGTTCACACACACCCAAGTCATTGGAATGGCCTCAGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 4341 0.4536 MSKDSEEIKTIEQWKWSEMQGLELVPDAATSQLQQQQDQVPREMETAREQPNKDAAASAAVTMNGGSIGGEKAESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPIFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLETALNQDIQFFDTDVRTSDVVFAINSDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALAQAGNIVEQTVAQIRVVLAFVGESRALQAYSSALRVAQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDRNSESGIELETVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGYETQVSHLCFMKMASVIACAMMIVMALFSQSTSLDFLIFGVELQKKHLIVSTEVHVHALHLKKAKRVTCFCQRACSFLNKDVTTDQPGNTRDITKNEDHENSSQLDSTRVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHSNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPIVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSERKIVGLFTSNLQAPLKRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDQDATPFPDRLRGEVELKHVDFFYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESASEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNASLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHTQVIGMASGSSSSTRPKDDEREG 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02494 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 420 761 IPR003439 GO:0005524
Vimu6g02494 1446 Pfam ABC transporter 438 536 IPR003439 GO:0005524
Vimu6g02494 1446 CDD ABC_6TM_Pgp_ABCB1_D1_like 96 393 - -
Vimu6g02494 1446 Pfam ABC transporter 1199 1347 IPR003439 GO:0005524
Vimu6g02494 1446 CDD ABC_MTABC3_MDL1_MDL2 1180 1419 - -
Vimu6g02494 1446 Gene3D - 655 765 IPR027417 -
Vimu6g02494 1446 Gene3D - 1169 1420 IPR027417 -
Vimu6g02494 1446 Gene3D - 410 552 IPR027417 -
Vimu6g02494 1446 FunFam ABC transporter B family member 1 1170 1420 - -
Vimu6g02494 1446 PANTHER ABC TRANSPORTER B FAMILY 69 908 IPR039421 -
Vimu6g02494 1446 Gene3D ABC transporter type 1, transmembrane domain 83 409 IPR036640 GO:0005524|GO:0016020
Vimu6g02494 1446 Gene3D ABC transporter type 1, transmembrane domain 836 1145 IPR036640 GO:0005524|GO:0016020
Vimu6g02494 1446 Gene3D ABC transporter type 1, transmembrane domain 766 778 IPR036640 GO:0005524|GO:0016020
Vimu6g02494 1446 MobiDBLite consensus disorder prediction 1427 1446 - -
Vimu6g02494 1446 FunFam ABC transporter B family member 19 1146 1168 - -
Vimu6g02494 1446 MobiDBLite consensus disorder prediction 27 41 - -
Vimu6g02494 1446 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 98 385 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02494 1446 FunFam ABC transporter B family member 1 836 1145 - -
Vimu6g02494 1446 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 857 1144 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02494 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 768 IPR027417 -
Vimu6g02494 1446 MobiDBLite consensus disorder prediction 638 653 - -
Vimu6g02494 1446 MobiDBLite consensus disorder prediction 27 59 - -
Vimu6g02494 1446 ProSitePatterns ABC transporters family signature. 664 678 IPR017871 GO:0005524|GO:0016887
Vimu6g02494 1446 ProSitePatterns ABC transporters family signature. 1319 1333 IPR017871 GO:0005524|GO:0016887
Vimu6g02494 1446 FunFam ABC transporter B family member 1 83 418 - -
Vimu6g02494 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1171 1419 IPR027417 -
Vimu6g02494 1446 CDD ABC_6TM_Pgp_ABCB1_D2_like 846 1162 - -
Vimu6g02494 1446 Pfam ABC transporter 610 692 IPR003439 GO:0005524
Vimu6g02494 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1182 1416 IPR003439 GO:0005524
Vimu6g02494 1446 SUPERFAMILY ABC transporter transmembrane region 844 1164 IPR036640 GO:0005524|GO:0016020
Vimu6g02494 1446 MobiDBLite consensus disorder prediction 633 658 - -
Vimu6g02494 1446 SMART AAA_5 1207 1399 IPR003593 GO:0016887
Vimu6g02494 1446 SMART AAA_5 447 738 IPR003593 GO:0016887
Vimu6g02494 1446 Pfam ABC transporter transmembrane region 97 370 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02494 1446 Pfam ABC transporter transmembrane region 858 1127 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02494 1446 SUPERFAMILY ABC transporter transmembrane region 84 404 IPR036640 GO:0005524|GO:0016020
Vimu6g02494 1446 CDD ABC_MTABC3_MDL1_MDL2 420 764 - -
Vimu6g02494 1446 Gene3D ABC transporter type 1, transmembrane domain 1146 1423 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02494 Vimu-Chr6 21699124 21705035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02494 71 552 Calmodulin-binding Proteins AT2G36910 88.382 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02494 K05658 - gmx:100814667 1458.35