Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02493 ATGGGTAGAGCTCCTTGCTGTGACAAGGCTAATGTAAAGAAAGGGCCATGGTCACCAGAAGAAGATGCAAAGCTAAAGGACTACATAGAGCAACATGGCACCGGAGGGAATTGGATTGCCCTCCCCCAAAAAGTTGCTACACTTTCCAAAACTAATGATGATGGCCAAACCATGCTGATATGCAAGGATCTTGCTACCCCTTTGCGTTTGAAAAGATGTGGCAAGAGCTGTCGATTAAGGTGGCTTAATTATCTTAGACCCAACATCAAGCATGGTCAATTTTCTGTTGAAGAAGATAAAATAATCTGTAGCCTCTTTGCTAGCATTGGAAGCAGATCTGGTGTCAGTAAGTTTGACATTTTCACTGAGTGCAGGTGGTCCATAATAGCTTCTCAGCTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAGAAAATGACGGCCATGAATCCTTCTCCCCAGAAGAAGCCTCTTCAAATTACCCTTTTATCCATCCTTGAAAGCTTAACACCATCTTCATCATCATTGTCATTCAGAGACAACAGCAGCAACAACAACAACTCATACTACCATCCCCACGGTTCTTTCACAGGCGTCGGCTCCTTTTCCTACTCTTCATGTCTTCTGAGTGGAAACAACTCTTCTGCTTCTGCTGATTCCTTCTTTCGAGCACAAGAGAGTTTCATGGACCCCACCCAGAAGGGCCAATTCAAAGATAGCAGCAGCAATAGCATGCTTGTGTTCGGTGGTGAAGCCACAGCCACCAGTTGCAGCTCTTCTGATGCGAGCTGCAACAACCAGATCAGACAAATCATGGAGTCAGAATTTGGCGAGGCGAGCTTTGTGGAGCAGATAGGTGTTGCTGATAATCCCTTCTACATTGGGGTAGAAAATACTACTAACAAGTTGATGATGTTCTCCAGTGGTGGCAGTGGTAGTGTCAGTGGGTGGACAGACAAACAAAATGGATTGTGGGAAAAAAATCCGTTGGATTATGGTCTAGAGGAAATTAAACAGCTAATTAGCACTAATAACAGTTTTAACAACTTTTTGTTTGATGATAAGAAGACAGAAGAAAGGGTCACGTATTACTGA 1116 0.4373 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEQHGTGGNWIALPQKVATLSKTNDDGQTMLICKDLATPLRLKRCGKSCRLRWLNYLRPNIKHGQFSVEEDKIICSLFASIGSRSGVSKFDIFTECRWSIIASQLPGRTDNDIKNYWNTKLKKKMTAMNPSPQKKPLQITLLSILESLTPSSSSLSFRDNSSNNNNSYYHPHGSFTGVGSFSYSSCLLSGNNSSASADSFFRAQESFMDPTQKGQFKDSSSNSMLVFGGEATATSCSSSDASCNNQIRQIMESEFGEASFVEQIGVADNPFYIGVENTTNKLMMFSSGGSGSVSGWTDKQNGLWEKNPLDYGLEEIKQLISTNNSFNNFLFDDKKTEERVTYY 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02493 371 PANTHER OS09G0431300 PROTEIN 1 346 - -
Vimu6g02493 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 153 IPR017930 -
Vimu6g02493 371 CDD SANT 94 149 IPR001005 -
Vimu6g02493 371 ProSiteProfiles Myb-like domain profile. 9 85 IPR001005 -
Vimu6g02493 371 Gene3D - 92 168 - -
Vimu6g02493 371 SUPERFAMILY Homeodomain-like 71 159 IPR009057 -
Vimu6g02493 371 SMART sant 13 87 IPR001005 -
Vimu6g02493 371 SMART sant 90 151 IPR001005 -
Vimu6g02493 371 SUPERFAMILY Homeodomain-like 8 52 IPR009057 -
Vimu6g02493 371 Pfam Myb-like DNA-binding domain 92 147 IPR001005 -
Vimu6g02493 371 Pfam Myb-like DNA-binding domain 14 85 IPR001005 -
Vimu6g02493 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 85 IPR017930 -
Vimu6g02493 371 CDD SANT 16 85 IPR001005 -
Vimu6g02493 371 Gene3D - 7 91 - -
Vimu6g02493 371 ProSiteProfiles Myb-like domain profile. 86 149 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02493 Vimu-Chr6 21666848 21668281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02493 1 153 MYB Transcription Factor Family AT5G57620 67.320 1.04e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g02493 Myb_DNA-binding 3.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02493 K09422 - gmx:778084 465.692