Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02479 ATGGCGTCTCCTATTGAATTCGCGGACTACGAGGAAAACCTAATCGAGGCGCCGCAACTTATTGGAAACCCCGCAGACTATGGAATCACTGAAGATGAAGAAACCGAAGAAGACGAAGACGAAGACGACGAAGAGTACGTTCCCGGTGTGGCCACCCCTAGGGTTTCGCACGACACTACTCCAAGCGTTTCATCTGATAACGTAATTGTTATCCCCGACGAATCGCAGGATTGCGTGGGAGAGGAGAGGAATAAACGCCGTAGGTTTGACGGAGGCGAGGCTTCTTGTTCCTTCGCGACTGGGAGCAGCAACGGGAGCCAAGAAAACGACCATACCGACATTGACGGTCTTTTTTGCCCTATTTGCATGGATGTTTGGACCAATAACGGCGAACATCATATCTGTTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAGATGGCTTCAACAACGCAAAAATTCCAGCAAGTGTCCCCAATGTAATAGGAAATGTACGTTGAAGGATGTGAGGAAACTGTTTGCTTCCCGAGTAGTTGCGGTCGAGGAAGAATCTCAGAAGAGAATTCAGTCACTTGAGGCCAAATGTGCTGCCCTTGACAGTAAGGTCAGTGATTGGTGCAATAAAGAAGAGGGATGGAAACGTCGAGAAGTCACCTTGCATTCTCAAGTTCAGACTCTTACACAGAGAAACGCTTATTTGGAGCAGCTGCTACTAGATATGCAGAGCAGGGAATCTGCATCGATAAGTCGCAATGGAAGCTCTCAGGGGAGATGTGAATCTGGCCCAAAGTACTATGGAAAGGGATCCATTTGTAATTTTGAATTGCAGAAAGAGATTCATCTCGATGGTGCACGCATTTTTGATATGGACATTTCTAATCAAATTTTATTAATCGCACAAAAGCCAAAGGAAGTAGGTGGAATGCACTTGCTAACTAAAATGAGCTTGTTGTCTCCATCTGAGATGCAAAATATCTTACTGCCTTCTGCTACAAGTGTTGTTAAAGACCTTCATATTTCTCCTTCTAATGGTAGTATGGCTCTCTTTTCTTCATTGGGGAAGAAACTATCAGTGCTCAGCTTGGACAGTGGCAATCTTGTTATCAATTATGATTTACAGGATCCTGCATGGTCTTGTTCGTGGGATCTGAACAATTCGCATAACATATATGCTGGACTACAGAATGGTTCTGTCTTAGTGTTTGACATGCGTCAAACTGTAGGCCCCATGAAATCTTTAGTTGGTTTGACTAATAACCCTGTGCATACTGTCACTTCTCTTGCACAAACTTCAAGTCTTTCTCCGGGTGTTAAAACCATCCTATCGGCATCTGCCTTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAACGGCCGCTTGTGGTTCCTGAAACTGATAATCAAGGAGTCTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGCTTCATACAGACCGAAATTCAACAAGTCGATGGATGTGCCTCTATCTCAACCGTTGGCCACTCCTCTTAGTGCTGGACAAGGAGTACAGGGCACTCATGTCTTGTTCAATAGAATGGGTAGTCATCATTTCCAAAAGTTGGGTTCCTCCCATGCAAACGTGAGTAAAATTCGACTACCAAAATGTGTAATTATGGACGTAGAGAGTCAGAGCAGATTGTTAGCATCTTGGGATGAAGTTACATGTGATTTGGTCTTGCATGAGTTGCCATCTTTTAGACTTCTTCAACAATTCAAAATTCCAGGTCAGGCCCGTGATCTTAGGTACTCACCTAGACACGGCGTACTGGGTTGTCTAAGTGAGAACACGTTGCAGGTTTTCTATTCCAAACACTCGTCGGTAAGGTAA 1872 0.4444 MASPIEFADYEENLIEAPQLIGNPADYGITEDEETEEDEDEDDEEYVPGVATPRVSHDTTPSVSSDNVIVIPDESQDCVGEERNKRRRFDGGEASCSFATGSSNGSQENDHTDIDGLFCPICMDVWTNNGEHHICCLPCGHIYGMSCIKRWLQQRKNSSKCPQCNRKCTLKDVRKLFASRVVAVEEESQKRIQSLEAKCAALDSKVSDWCNKEEGWKRREVTLHSQVQTLTQRNAYLEQLLLDMQSRESASISRNGSSQGRCESGPKYYGKGSICNFELQKEIHLDGARIFDMDISNQILLIAQKPKEVGGMHLLTKMSLLSPSEMQNILLPSATSVVKDLHISPSNGSMALFSSLGKKLSVLSLDSGNLVINYDLQDPAWSCSWDLNNSHNIYAGLQNGSVLVFDMRQTVGPMKSLVGLTNNPVHTVTSLAQTSSLSPGVKTILSASAFGLCQWNIDSEERPLVVPETDNQGVCISLAYCPSSDDIVASYRPKFNKSMDVPLSQPLATPLSAGQGVQGTHVLFNRMGSHHFQKLGSSHANVSKIRLPKCVIMDVESQSRLLASWDEVTCDLVLHELPSFRLLQQFKIPGQARDLRYSPRHGVLGCLSENTLQVFYSKHSSVR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02479 623 MobiDBLite consensus disorder prediction 16 65 - -
Vimu6g02479 623 Pfam Ring finger domain 119 165 IPR001841 -
Vimu6g02479 623 PANTHER RFWD3 PROTEIN 31 616 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Vimu6g02479 623 Gene3D - 203 499 IPR015943 GO:0005515
Vimu6g02479 623 CDD mRING-C3HGC3_RFWD3 115 177 - -
Vimu6g02479 623 SMART ring_2 119 164 IPR001841 -
Vimu6g02479 623 ProSiteProfiles Zinc finger RING-type profile. 119 165 IPR001841 -
Vimu6g02479 623 SUPERFAMILY WD40 repeat-like 277 586 IPR036322 GO:0005515
Vimu6g02479 623 Coils Coil 185 205 - -
Vimu6g02479 623 SUPERFAMILY RING/U-box 112 171 - -
Vimu6g02479 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 202 IPR013083 -
Vimu6g02479 623 MobiDBLite consensus disorder prediction 29 46 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02479 28 177 C3H Transcription Factor Family AT3G07200 25.698 1.83e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02479 K15691 - gmx:100818898 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02479 6 21549000 21554273 Vimu6g02479 6 21549000 21554273 ECH