Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02466 ATGCTCCAGACAACCTGCATTTTCCTACTCTCACTTCTAACTTCTTTTTCACCGCTTGGAACGGCAATGCTTAACCTAACCCTTCCAGGAGCACATCCAGACCCCGAAGCTGTTGCCCACGAAGTTCATAGGAAGGTAAATGCTTCAATTGCAAGAAGGGAGATGTTATCAGTGTCAGAGAGAGACGAGTCTTCGTGTCTAACGGGGAACCCCATTGATGATTGTTGGAAATGTGACCCAGATTGGCCCAACAACCGGCAGAGGCTGGCTGACTGCGCCATTGGGTTTGGTCAGTATGCAAAGGGAGGGAAAGGTGGTGAGTTTTACGTGGTCACTGATTCCTCTGACGGGGACCCTGTGAACCCAAAACCTGGGACGCTGAGATACGCTGTGATACAGAACGAGCCACTCTGGATCGTCTTCCCCAGTAACATGATGATTAAGCTGTCCCAGGAGCTGATTTTTAACAGCTACAAGACCATTGATGGACGAGGTGCTGATGTGCACATCGTCGGAGGAGGCTGCATTACTCTGCAGTATATAAGCAATGTCATCATACACAACATTCACATCCATCATTGTCATCCCTCAGGGAACACGAACGTTCGGTCAAGCCCGGAGCACTACGGATTCCGGACAGAGTCGGACGGGGACGGAATATCTATATTCGGGTCGAAGGATATATGGATCGACCACTGCACGTTATCTCGGTGCAAGGATGGGTTGATAGACGCGGTGATGGGGTCGACGGGGATAACCATCTCGAACAACTACCTCTCACACCACAACGAGGTGATGCTCCTGGGCCACAGCGACGACTACCTCCCAGACTCCGGCATGCAGGTGACCATCGCCTTCAACCACTTCGGAGAGAAGCTGGTCCAGAGAATGCCCCGCTGCCGGAGGGGCTACATCCACGTCGTCAACAACGACTTCACTGAGTGGGAGATGTACGCCATCGGTGGCAGCGGCGAACCCACCATTAACAGTCAGGGGAACCGTTACATGGCACCCCAAAACCCCTTCGCCAAGGAGGTTACGAAACGAGTGGACACCCAACAGTCAAAGTGGAAGGGCTGGAACTGGAGGTCTGAGGGTGACATTTTACTCAACGGTGCCTTCTTCGTGGCGTCTGGTGAGGGCCTCGAGGTCAAGTACGAGAAAGCCTACAGCGTTGAACCTAAATCAGCCGATCGTATCTCTCTTCTCACCATGTCCTCCGGTGTTCTTGGAAATGCCAGGGACAACAACCTCGGAATGTGGAGCAGAGGACCTGGTGATGAATCTACGGAATCCGGCATGGAATACACCGACGACATGTCCACCCCTGCAACAATCCTTCCACCGTCTCTTTTTCTTCTCTTGTTGTCTTCCACCATAATCTTCACGGTTATTCTATAG 1401 0.5211 MLQTTCIFLLSLLTSFSPLGTAMLNLTLPGAHPDPEAVAHEVHRKVNASIARREMLSVSERDESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDGDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYMAPQNPFAKEVTKRVDTQQSKWKGWNWRSEGDILLNGAFFVASGEGLEVKYEKAYSVEPKSADRISLLTMSSGVLGNARDNNLGMWSRGPGDESTESGMEYTDDMSTPATILPPSLFLLLLSSTIIFTVIL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02466 466 SMART amb_all 144 341 IPR002022 -
Vimu6g02466 466 MobiDBLite consensus disorder prediction 417 436 - -
Vimu6g02466 466 FunFam Pectate lyase 69 411 - -
Vimu6g02466 466 Pfam Pectate lyase 153 329 IPR002022 -
Vimu6g02466 466 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Vimu6g02466 466 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Vimu6g02466 466 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Vimu6g02466 466 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Vimu6g02466 466 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Vimu6g02466 466 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Vimu6g02466 466 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Vimu6g02466 466 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Vimu6g02466 466 SUPERFAMILY Pectin lyase-like 64 394 IPR011050 -
Vimu6g02466 466 Gene3D - 69 411 IPR012334 -
Vimu6g02466 466 PANTHER PECTATE LYASE 18-RELATED 30 412 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02466 Vimu-Chr6 21480745 21482969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02466 1 463 Polysaccharide Lyase AT3G53190 74.473 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02466 K01728 - gmx:100775595 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02466 6 21480745 21482969 Vimu6g02466 6 21480745 21482969 ECH
Vimu6g02466 6 21480745 21482969 Vimu3g01203 3 20508198 20508803 PCT