Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02462 ATGCAAATGCAAGAGGAACACATGCAAATCATCAAGGGCAAGCGCACAAAGCGTCAGAGGCTTCCATCCCCACTTAGGTTAACCATGTCAACATGTTCCACCGCAGGAAGAAGCAGCACCGACAACTCCGCAGCTTTTGAGCCTCCGACAACCTCAAATGATTTAAGGAACGAAGAGGATGAAGACTTGGCCAATTGTTTGATTCTCTTGGCTCGAGGCCATACCACTCCAAAACCCTCACACGCCAAGGAATCGGGGCTATATGTTTACGAGTGCAAGACTTGCAACCGATGCTTCCCTTCGTTTCAAGCCCTCGGTGGCCACAGAGCCAGCCACAAGAGATTTTCCAAGGCTGGTGCAGAAGAAAAGCAAGGACTAGTTACTACTTTTGGGGATAATAATAGTAGTAAAAATAATCATGATGATTATTGTGTCCCCACAAGCACCACTCTCACCTTACAATTATCAACAGTTTTGTATAATAGTAGCAACAGCACTAGGAGTAGCACTGTTAATGCTAAATCTAAGGTTCATGAGTGTTCCATATGTGGGGCAGAGTTCTCATCTGGGCAAGCCTTGGGAGGGCACATGAGAAGGCACAGAAATTTTCTGAGTTCACCTTCGAGTGGAGCAATTGCATATGCTGCTGATGGAATCCCCGAAATTCCAGAAATCAAGAAACAGAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCACCACAGAGAATCCAACTTGTTTCCTTTTCAGTCCAAAGAAAAAGTCATTGTCTTCTCTGCAACTTCTTTGGTGGATTGCCATTACTAA 822 0.4489 MQMQEEHMQIIKGKRTKRQRLPSPLRLTMSTCSTAGRSSTDNSAAFEPPTTSNDLRNEEDEDLANCLILLARGHTTPKPSHAKESGLYVYECKTCNRCFPSFQALGGHRASHKRFSKAGAEEKQGLVTTFGDNNSSKNNHDDYCVPTSTTLTLQLSTVLYNSSNSTRSSTVNAKSKVHECSICGAEFSSGQALGGHMRRHRNFLSSPSSGAIAYAADGIPEIPEIKKQKDVLNLDLNLPAPEDDHHRESNLFPFQSKEKVIVFSATSLVDCHY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02462 273 SMART c2h2final6 178 200 IPR013087 -
Vimu6g02462 273 SMART c2h2final6 90 112 IPR013087 -
Vimu6g02462 273 MobiDBLite consensus disorder prediction 1 58 - -
Vimu6g02462 273 SUPERFAMILY beta-beta-alpha zinc fingers 89 200 IPR036236 -
Vimu6g02462 273 Gene3D Classic Zinc Finger 89 200 - -
Vimu6g02462 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Vimu6g02462 273 PANTHER ZINC FINGER PROTEIN ZAT5 20 254 - -
Vimu6g02462 273 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Vimu6g02462 273 MobiDBLite consensus disorder prediction 23 52 - -
Vimu6g02462 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 200 IPR013087 -
Vimu6g02462 273 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Vimu6g02462 273 Pfam C2H2-type zinc finger 89 113 - -
Vimu6g02462 273 Pfam C2H2-type zinc finger 177 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02462 Vimu-Chr6 21431021 21431842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02462 6 273 C2H2 Transcription Factor Family AT2G28200 44.000 2.01e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g02462 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02462 - - var:108322426 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02462 6 21431021 21431842 Vimu6g02462 6 21431021 21431842 ECH
Vimu3g01196 3 20424382 20425424 Vimu6g02462 6 21431021 21431842 ECH
Vimu4g00694 4 5365915 5366814 Vimu6g02462 6 21431021 21431842 ECH
Vimu6g02462 6 21431021 21431842 Vimu4g00694 4 5365915 5366814 ECH
Vimu6g02462 6 21431021 21431842 Vimu3g01196 3 20424382 20425424 PCT