Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02458 ATGGCTTTCCTCTCGGGAGCCATCCTAACCTCAACATTGCTCTTTCTTGTTGCATTCTCACTTCCTAATGTCTATGCTGCTGGCAAAAGCAATAACAAATATAACAAGAAAGGTGAACTCAGACATCATCGTCCAATTTTTAAGCCTACTGGATGGAAGAAAGCTCTTGCAACCTTCTACGATGGAGACACTAAAACATTTGGTGGAGCTTGTGGGTACGATGATGTGGTTAAGGATGGTTATGGCCTAGACACGACAGCATTGAGTTCAGTTTTGTTCAAGGATGGACAGACATGTGGTGCATGTTACGAGATCAAATGTGTAAATTCTCGTGCAGGATGTAAGACAGGGAAATCCTCTATTTTTGTGACGGGAACCAACCTTTGTCCTCCAAACTACGATATACCTGGTGATAATGGAGGATGGTGCAACCCACCACGCGAACACTTTGATTTGGCAAAACCTGCATATCTCAAAATTGCAGAGTATAAGGCTGGCATAGTCCCAATAAATTATCGCAGGGTACCGTGCAAGAAGAAAGGAGGAATTCGGTTCACTATCACTGGGAATCCTTATTTTAATCTGGTATCAGTGTGGAATGTTGGAGGAGCTGGAGATATCACACAAGTGCAGCTAAAGGGTAACAACAAAATCAAGCATTGGACAAATTTGAAGCGAAATTGGGGTCAAAAATGGGAAACTGATGTGATGTTAGTGGGAGAGGCATTGTCTTTCAGAGTGAGAAGCAGTGATCTCAGGTACTCTACCTCTCGCTGGATTGCTCCCAGTAATTGGAAATTTGGTCAGACTTTTGTTGGCAAGAACTTCGTTTAG 834 0.4293 MAFLSGAILTSTLLFLVAFSLPNVYAAGKSNNKYNKKGELRHHRPIFKPTGWKKALATFYDGDTKTFGGACGYDDVVKDGYGLDTTALSSVLFKDGQTCGACYEIKCVNSRAGCKTGKSSIFVTGTNLCPPNYDIPGDNGGWCNPPREHFDLAKPAYLKIAEYKAGIVPINYRRVPCKKKGGIRFTITGNPYFNLVSVWNVGGAGDITQVQLKGNNKIKHWTNLKRNWGQKWETDVMLVGEALSFRVRSSDLRYSTSRWIAPSNWKFGQTFVGKNFV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02458 277 PANTHER EXPANSIN-A15 23 276 IPR002963 GO:0009664
Vimu6g02458 277 SUPERFAMILY PHL pollen allergen 179 272 IPR036749 -
Vimu6g02458 277 Pfam Expansin C-terminal domain 183 262 IPR007117 -
Vimu6g02458 277 SMART dpbb_1 85 172 IPR007112 -
Vimu6g02458 277 SUPERFAMILY Barwin-like endoglucanases 51 200 IPR036908 -
Vimu6g02458 277 Gene3D - 39 178 IPR036908 -
Vimu6g02458 277 CDD DPBB_EXPA_N 51 177 - -
Vimu6g02458 277 Pfam Lytic transglycolase 86 172 IPR009009 -
Vimu6g02458 277 Gene3D - 180 276 IPR036749 -
Vimu6g02458 277 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Vimu6g02458 277 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Vimu6g02458 277 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Vimu6g02458 277 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Vimu6g02458 277 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Vimu6g02458 277 PRINTS Expansin signature 107 118 IPR002963 GO:0009664
Vimu6g02458 277 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Vimu6g02458 277 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Vimu6g02458 277 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Vimu6g02458 277 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Vimu6g02458 277 PRINTS Expansin signature 259 275 IPR002963 GO:0009664
Vimu6g02458 277 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Vimu6g02458 277 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Vimu6g02458 277 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Vimu6g02458 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 273 IPR007117 -
Vimu6g02458 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 182 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02458 Vimu-Chr6 21392395 21393520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02458 46 276 Expansin Gene Family AT3G55500 61.803 2.41e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02458 - - gmx:100800424 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02458 6 21392395 21393520 Vimu6g02458 6 21392395 21393520 ECH