Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02438 ATGATGGGATTCAACAGAAACCTCTTCTGCCTTTCTGCCTTTCTCATTTTTCTCTTTTCTATCTCCTTTATTTTCTATTGCACTTCACCTTCCCCCACCGATAACACAGCCATTAGTCCTCACGACAGTTTCAGTTTCCAGCTTGGTATATTTAGTGGAGCTCAAGACTTGGTATCTCTGATAACAAGTATAGCTAGGAGGAGACACCATCACCATCATCATAAGGAAAAATGTGAAGGGGCCAAGTGGGATTCCAGGCTCATTCAAGCCTATAACGTGAGTCTTGTTTTCACGGTTGATTTAAAGGGCTGTGCTAACTTCAGTAGCGTTCAAAAAGCTGTTGATGCTGTTCCTGAATCTAGCTCTGATACCACCCTTATCATAATCGATTCTGGTACATACAGGGAGAAGGTAGATGTGCAAGCCAACAAAACAAACTTAATAATTCAAGGTCAAGGATATCTGAATACAATCATAGAATGGAACGACACCGCCAATTCCACCGGCGGTACTTCCTACAGCTACTCCTTTGCCATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCCCCACCGTCACCAGGAGAGGTGGGGGCACAAGCAGTAGCACTGAGAGTCACCGGTGATCAAGCAGCCTTCTATGGATGTGGATTTTATGGTGCACAGGATACACTGAATGATGATAATGGAAGACATTATTTCAAAGAATGCTTAATCCAAGGTTCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTAGCATAAACTGTGTAGCAAAAGCAGAGAAGGATGAGATTAGTGGGTCGATCACTGCTCAAGGGAGACAATCGATGGATGACAAAAGTGGGTTTTCCTTTGTGAATTGTAGCATCGTTGGGAGTGGAAGAGTGTGGCTTGGAAGAGCTTGGGGAGCCTATGCCACTGTAATCTTCTCGACAACATACATGTCTGATGTCGTAGCACCTGAAGGATGGAATGATTGGAGAGATCCCTCTAGAGACCGTTGCCATGGAGCTGGAGCAAATTATGCATCCAGAGTCTCTTATGCCAAGCAACTCAGGGATTACGAAGCAAACTCTTACATGGATATTTCATACATTGATGGAAATGATTGGCTCCTTAATTATCGTCATAGTTAA 1170 0.4308 MMGFNRNLFCLSAFLIFLFSISFIFYCTSPSPTDNTAISPHDSFSFQLGIFSGAQDLVSLITSIARRRHHHHHHKEKCEGAKWDSRLIQAYNVSLVFTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVDVQANKTNLIIQGQGYLNTIIEWNDTANSTGGTSYSYSFAIFASKFTAYNISFKNTAPPPSPGEVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDNGRHYFKECLIQGSIDFIFGNGRSLYEDCSINCVAKAEKDEISGSITAQGRQSMDDKSGFSFVNCSIVGSGRVWLGRAWGAYATVIFSTTYMSDVVAPEGWNDWRDPSRDRCHGAGANYASRVSYAKQLRDYEANSYMDISYIDGNDWLLNYRHS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02438 389 FunFam Pectinesterase 91 388 - -
Vimu6g02438 389 Gene3D - 91 388 IPR012334 -
Vimu6g02438 389 ProSitePatterns Pectinesterase signature 2. 245 254 IPR033131 -
Vimu6g02438 389 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 87 383 - -
Vimu6g02438 389 Pfam Pectinesterase 99 379 IPR000070 GO:0030599|GO:0042545
Vimu6g02438 389 SUPERFAMILY Pectin lyase-like 93 383 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02438 Vimu-Chr6 21265616 21268583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02438 99 383 Carbohydrate Esterase AT1G05310 53.378 8.77e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02438 - - vun:114181275 681.019