Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02435 ATGAACTCCTATGTCACCCCTCTTGTTATCTCCATTGTTGGCATAGTTTGTTCTACTGTGGCAATGGCAGTGTACCACTGCATAATCCTCTTGAGGCAAGTCGTCAGAACTCACAATGCACAAAGAATCCTCTTGAGGCGTGTCGTCAGAACTCACAATGCACAACGCAGGGACAACACAACTTGTGTAAAGAGTGAAGGGATCCAACCAGAAATCCTTAACAAAATCCCAGTTTTCTCAATCTCTACACCACAAACAAGTATTCATTTGAACCAAAATATTGAATGCTCCATTTGCCTTGGACAGTGGGAAGATGAGGATGTGGTGCGGTTGTTGCCTTCTTGTAATCATGTTTTTCACAAATCCTGCATTGATGCATGGTTCATGCACCATGCCAATTGCCCAGTTTGTCGATCACCAGTCACTTCTGACTGTGAGTTAGCCTTGCCAATGGCTTCACAAAATGGTGATGCCTAA 477 0.4382 MNSYVTPLVISIVGIVCSTVAMAVYHCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTTCVKSEGIQPEILNKIPVFSISTPQTSIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMASQNGDA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02435 158 SUPERFAMILY RING/U-box 86 144 - -
Vimu6g02435 158 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Vimu6g02435 158 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 142 IPR044675 -
Vimu6g02435 158 Pfam Ring finger domain 95 138 IPR001841 -
Vimu6g02435 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 144 IPR013083 -
Vimu6g02435 158 SMART ring_2 96 137 IPR001841 -
Vimu6g02435 158 CDD RING-H2_PA-TM-RING 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02435 Vimu-Chr6 21232281 21232757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02435 7 151 C3H Transcription Factor Family AT2G35420 33.784 8.18e-21 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02435 - - vra:106756930 307.76