Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02434 ATGGGATTTGAACAGGACACAGTTCTGGTACCTCCTTGGCTGGAACAACTTCTTCACACAGCTTTCTTCAATGTATGTCGAATTCACGCAGACGCAGCCAGGAGTGAATGTAACATGTTTTGTCTAGATTGCAATGGCGAAGCCTTCTGTTTTTATTGCCGTTCTTCTCGACACAAAGATCATCGAGTAATTCAGATAAGAAGATCTTCGTATCATGATGTAGTGAGGGTGGCTGAAATTCAGAGGGTGTTGGACATAAGTGGAGTGCAGACATATGTGATAAACAGTGCTAGAGTTTTGTTCTTGAATGTGAGGCCACAACCAAAATCTGGGAAAGGAGTAGCTCACATCTGTGAGATTTGTGGAAGGAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGAAATGAAGAATTGACAATGGAGACTACCACTACTACCACCACATCAACTTCAAGAGGATCAGTCTCATCAAATCACCAAGAAGAAGGATTGCGTGAAGGTTCAACACAAGACATGTATCAAGTCACACCTCCTTCAAACGCAAGGAGAAGAAAAGGAATTCCTCATAGGGCACCCTTTGCCTCCTAA 648 0.4306 MGFEQDTVLVPPWLEQLLHTAFFNVCRIHADAARSECNMFCLDCNGEAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVAEIQRVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFALDGRNEELTMETTTTTTTSTSRGSVSSNHQEEGLREGSTQDMYQVTPPSNARRRKGIPHRAPFAS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02434 215 SUPERFAMILY B-box zinc-binding domain 21 67 - -
Vimu6g02434 215 MobiDBLite consensus disorder prediction 155 215 - -
Vimu6g02434 215 MobiDBLite consensus disorder prediction 157 197 - -
Vimu6g02434 215 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 213 - -
Vimu6g02434 215 Pfam PLATZ transcription factor 67 138 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02434 Vimu-Chr6 21228926 21230028 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vimu6g02434 PLATZ 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02434 - - gmx:100803076 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02434 6 21228926 21230028 Vimu6g02434 6 21228926 21230028 ECH
Vimu6g02434 6 21228926 21230028 Vimu3g00846 3 9843021 9844781 PCT