Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02428 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCGCCAATATCATCATCAAATCGTATCATACTCTTTCCCTCTTCTTTCTTCTTTCTTCTTTCACTCACCTCACAACCAACGTTTTTTTGTTCAGTAGAACACGAGAACAATCTCCTGCGGTCGCGCCTTCTCTTCCCTTTCCTACTACTTCGCTCGGCAGATTTATCCATGGCGGTTCCTCCGTCGGTCGCTGCCTCTCCGGCGTCACTTTACGTCGGCGACCTCCATTCTGACGTCTCTGACAGCCACCTCATCGATGTATTCTCCGAGTTCAAGAGCCTTAACTCCGTTCGCGTCTGCAAAGACTCCTCCACTGGCAAATCC 357 0.5014 LSLSLSLSLSPSPISSSNRIILFPSSFFFLLSLTSQPTFFCSVEHENNLLRSRLLFPFLLLRSADLSMAVPPSVAASPASLYVGDLHSDVSDSHLIDVFSEFKSLNSVRVCKDSSTGKS 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02428 119 Gene3D - 64 119 IPR012677 -
Vimu6g02428 119 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 119 IPR000504 GO:0003723
Vimu6g02428 119 SUPERFAMILY RNA-binding domain, RBD 64 119 IPR035979 GO:0003676
Vimu6g02428 119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02428 Vimu-Chr6 21201837 21202193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02428 79 119 Eukaryotic Initiation Factors Gene Family AT2G36660 65.854 3.25e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02428 K13126 - gmx:100779547 90.1225