Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02427 ATGAAAGAGAGCGACGGGGGTGTGTTGATCGAGATCTTTGAGTTTGTTTATCCAATTCGTGCAATCGAGACTAAGAATCATACGTTGCTGAATGGAAAAATGATGAGAGTGATGTGGTCGCGTCGCGATCCTGACGCGAGGAAGAGCACTATTGGGAACTTGTTTATTAAGAACATACCGGAATCGATAGATAATGCTGGACTGCAAGATATATTCAAGAAATATGGAAATATTTTGTCCAGCAAAGTTGTCACGTCTGACGATGGGAAGAGTAAAGGATACGGTTTTGTTCAATTTGAATCGGAGGAATCCTCTCATGTTGCTATAGAGAAGCTGAATGGCTCTACTGTCGGTGATAAACAGTTATATGTCGGGAAGTTTGTAAAAAAATGTGATCGCATATTTCCTGGCGCGGATGCTAGATATACAAACTTGTACATGAAGAATTTGGACTTGAATATAACAGAAGAAAAATTGAAGGAGAAGTTTTCCTCTTTCGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACCACAATGGGATGCCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGGAATGAATGGATCACAATTAGGTAGTTCATGCACCCTTTTAGGCTTTCTGCAGGGTTCTAAGATTCTGTACGTAGCCAGAGCGCAAAAGAAAGCTGAGCGCGAGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAATATTGAAATACAAGGGGTCGAACGTTTATGTGAAAAATATTCATGACAATGTAAGTGACGAAGAACTGAGGGATCTTTTCAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCAAGATGACAAAGGCATATGTAAAGGGTTTGGCTTTGTCAACTTCTCCACTCCTGAGGAGGCTAATAAAGCCGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCATTGTATGTTGCCCTTGCTCAGAGGAAAGAGGACAGGAAAGCACAATTGCAGCTTCAATACACACAGCAAATAGCAGGACTAGCTGGACCTTCGACTACTAATATCCCTGGTGGATACACTCCTTATTATTATGCAGCTACTGGTGCTATTTCACATGTGCCTCCTCGAGCTGGACTGATGTATCATCCTCTTGCATTGAGGCCGGTATGGGGAGCTAATGCCTTTGCACCCCCTGCTATATCATTTCAACAGTCATCTCTTCCCGCAGTTTCTAACAATAATAGGCAGCATAGGCAAAACAGGGGCAGGTTGAATGGGCATTCAGCATCACAGGGAAATACTCAGTCTGGTACTTATTTGCAACAAGGCCAGCAGACTTCTCAGTCAATGATCTCTCCAAGAGACTCAAGTACTCAGCAGAGAACCGGACAGCTTAAGTATATACCCAATGGACGCCAGCGTGAAATGGAAAAAGGATCTGGTTCCTCATCCGCTACTTCAAATTCTGGTAGGGGGTCCCAGGGGCCAGAAATGCTGCATAGCTTTCTTGCAGGGGCTGCTCCCGAGCAGCAGAAAGAGATACTCGGAGAGCATCTTTACATGCTTTGTGTTTACTGTGATATCTTTGAGCAGCCTAGCCTAGCAGCAAAAATAACAGGTATGCTTTTGGAGATGGACAATGGAGAATTGTTGGTTCTCCTGGAATCGCCGGAGGCTCTTTCCGTGAAGGTGGAAGAAGTTGTGCAAGTGCTTAAGAACACTAAGACCAAAGTTTCTGGCCAGGACGTACTCCGTTCAAATTACCTTTCAGCTGAAGTTGCAGTAAACTAA 1809 0.435 MKESDGGVLIEIFEFVYPIRAIETKNHTLLNGKMMRVMWSRRDPDARKSTIGNLFIKNIPESIDNAGLQDIFKKYGNILSSKVVTSDDGKSKGYGFVQFESEESSHVAIEKLNGSTVGDKQLYVGKFVKKCDRIFPGADARYTNLYMKNLDLNITEEKLKEKFSSFGKIVSLAIAKDHNGMPKGFGFVNYDNPDDAKKAMEGMNGSQLGSSCTLLGFLQGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNVYVKNIHDNVSDEELRDLFSACGTITSAKVMQDDKGICKGFGFVNFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYTQQIAGLAGPSTTNIPGGYTPYYYAATGAISHVPPRAGLMYHPLALRPVWGANAFAPPAISFQQSSLPAVSNNNRQHRQNRGRLNGHSASQGNTQSGTYLQQGQQTSQSMISPRDSSTQQRTGQLKYIPNGRQREMEKGSGSSSATSNSGRGSQGPEMLHSFLAGAAPEQQKEILGEHLYMLCVYCDIFEQPSLAAKITGMLLEMDNGELLVLLESPEALSVKVEEVVQVLKNTKTKVSGQDVLRSNYLSAEVAVN 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02427 602 MobiDBLite consensus disorder prediction 418 473 - -
Vimu6g02427 602 CDD RRM2_I_PABPs 51 126 IPR045305 -
Vimu6g02427 602 CDD RRM4_I_PABPs 256 334 - -
Vimu6g02427 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 129 IPR000504 GO:0003723
Vimu6g02427 602 Gene3D - 40 125 IPR012677 -
Vimu6g02427 602 Coils Coil 226 246 - -
Vimu6g02427 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 211 IPR000504 GO:0003723
Vimu6g02427 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 122 IPR000504 GO:0003723
Vimu6g02427 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 327 IPR000504 GO:0003723
Vimu6g02427 602 FunFam Polyadenylate-binding protein 134 239 - -
Vimu6g02427 602 SMART poly_2 513 580 IPR002004 GO:0003723
Vimu6g02427 602 MobiDBLite consensus disorder prediction 418 504 - -
Vimu6g02427 602 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 20 578 IPR006515 GO:0003723
Vimu6g02427 602 SMART rrm1_1 258 330 IPR000504 GO:0003723
Vimu6g02427 602 SMART rrm1_1 144 216 IPR000504 GO:0003723
Vimu6g02427 602 SMART rrm1_1 53 125 IPR000504 GO:0003723
Vimu6g02427 602 SMART rrm2_1 258 330 IPR003954 GO:0003676
Vimu6g02427 602 SMART rrm2_1 53 125 IPR003954 GO:0003676
Vimu6g02427 602 Gene3D - 239 343 IPR012677 -
Vimu6g02427 602 Pfam Poly-adenylate binding protein, unique domain 509 577 IPR002004 GO:0003723
Vimu6g02427 602 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 501 582 IPR002004 GO:0003723
Vimu6g02427 602 FunFam Polyadenylate-binding protein 53 133 - -
Vimu6g02427 602 FunFam Polyadenylate-binding protein 240 348 - -
Vimu6g02427 602 Gene3D - 499 583 - -
Vimu6g02427 602 MobiDBLite consensus disorder prediction 482 501 - -
Vimu6g02427 602 SUPERFAMILY RNA-binding domain, RBD 53 218 IPR035979 GO:0003676
Vimu6g02427 602 Gene3D - 129 238 IPR012677 -
Vimu6g02427 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 334 IPR000504 GO:0003723
Vimu6g02427 602 PANTHER RNA BINDING PROTEIN 19 362 - -
Vimu6g02427 602 SUPERFAMILY PABC (PABP) domain 466 588 IPR036053 GO:0003723
Vimu6g02427 602 SUPERFAMILY RNA-binding domain, RBD 254 349 IPR035979 GO:0003676
Vimu6g02427 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 231 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02427 Vimu-Chr6 21198511 21201653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02427 21 600 Eukaryotic Initiation Factors Gene Family AT2G36660 48.810 4.42e-176 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02427 K13126 - gmx:100779547 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02427 6 21198511 21201653 Vimu6g02427 6 21198511 21201653 ECH
Vimu6g02427 6 21198511 21201653 Vimu3g00910 3 11040717 11044732 PCT