Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02425 ATGCAAATGATTGCTGAATCAAACATGAGACCCTGCTTCCGTTGTTGCTATTCCTATACCTTTCTATTTCTTTTCCTTCTCCTTCTCCATCACACTACTTCACAGAACACTTGCCCAAACTGTGGCTCTATGCAAGTTCCATATCCTTTGAGCACACATCCAAGTTGTGGTGATCCATACTACAAGCTTCGTTGTGATTCCCACTCTCAAAAGCTTTACTTCGACACCCTCAATGGAAGTTCCTATCTTCTTCTCCGAATCATGCCTTTGATCCAACGCATGGTGGTGGAGCCATCACCTTGGTTACCAGGTTCCTGTGTTACACAAGACATGCCCAGAAGCAACGGTATATGGTTGAACCAGTCACTTCCTTTCAATATAACTTCATCCAATACAGTGTTCCTCCTTAATTGCTCCCCACGCCTCTTGGTTTCTCCTCTCAACTGCACTTATTCCAGTGTTTGCCATCGTTACTTAGAGAGTTCAGGTCATGTTGACACAAAACGAGCGCTTGATTGTGCAAGCGGTCTTCACCCTTGCTGCACTTTTCTAGCTGGTGGGATACCTTCAGCTTACAGGATCAGGCTTCATGAGTCTGGCTGCAAAGCATTCAGAAGCATCCTTCATTTGAACCAAGACAAGCCTCCTAATCAGTGGGAGGAAGGGCTTGAAATTCAATGGGCTCTTCCACCTGAACCAGTGTGCAAGACACAAAAGGATTGCTCTGGAGACTCTACGTGTTCCCCTTCTGGTAGAAGTGGTTTATTTCGCTGTCTTTGTAATGGGGGACACCGTTGGGACCCTTCTGTCACAAAGTGTGTGAAGTATGAGAGAAAACCCAAATGGAAAACCAGCTTGGTGGTTTCAACAGGGGCTGTTGTTACCTTTTTCTCTCTCGTTGTGGTTCTGACCATCATCTCAAAGTCCCGAAAAATCTCAACCTATAGAGATAATAAAGCGAAGGAAAGAGAAGACAAACTGAAATCAAGTGCTGGGGATAAGCCTTGTAGGATGTTTCAATTGAAAGAGGTGAAGAAAGCAACAAATGGTTTTTCCCAACAGAGGTTCTTGGGAAGTGGTGGCTTTGGGGAAGTTTACAAAGGTGAGCTACAAGATGGAACATTAGTGGCAGTGAAGAAAGCTAGAGTGGGAAACCTGAAAAGCACCCAACAAGTGCTTAATGAGGTTGCAATACTCTCTCAAGTCAATCACAAGAACTTGGTCAGGCTCTTGGGGTGCTGTGTGGAATCTGAGCTACCATTTATGATCTACGAGTATATCTCAAATGGGACACTCTACGACCATCTTCATGGCAAGTATTGTTCCAACTTTCTAAACTGGAAAACGAGGCTCAAGGTTGCTTTTCAAACTGCAGAAGCATTGGCCTACCTGCATTCGGCTGCACACACTCCCATCTACCACAGAGATGTTAAGTCAACAAACATACTATTGGATGATGATTTCAATGCAAAGGTCTCAGATTTTGGACTGTCCAGATTGGCTAGCCCAGGACTGAGTCACGTTTCAACATGTGCTCAGGGAACGTTGGGGTACTTGGATCCTGAATACTACCGAAACTATCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGCTTTTGACTTCACAAAAAGCGATTGACTTCAGTCGGGATGAAGATGATGTGAACCTGGCAATTCATGTGAATCAACGTGCGAGCAATGGTAGAATCATGGAATTGGTGGATCAAAGGCTTCTTTCCGTGGAGAGCTCGGGAGATAAAATGTTGACAAGCATAAAAGTGTTCTTGGAGCTTGCACTCGAATGTCTGAGAGAGAAGAAAGCTGAAAGGCCAAGTATGAAGGATATTGTTCAACGGCTACTATGCATAATTAGGATTGAAGAAGGAGAGTGA 1911 0.4411 MQMIAESNMRPCFRCCYSYTFLFLFLLLLHHTTSQNTCPNCGSMQVPYPLSTHPSCGDPYYKLRCDSHSQKLYFDTLNGSSYLLLRIMPLIQRMVVEPSPWLPGSCVTQDMPRSNGIWLNQSLPFNITSSNTVFLLNCSPRLLVSPLNCTYSSVCHRYLESSGHVDTKRALDCASGLHPCCTFLAGGIPSAYRIRLHESGCKAFRSILHLNQDKPPNQWEEGLEIQWALPPEPVCKTQKDCSGDSTCSPSGRSGLFRCLCNGGHRWDPSVTKCVKYERKPKWKTSLVVSTGAVVTFFSLVVVLTIISKSRKISTYRDNKAKEREDKLKSSAGDKPCRMFQLKEVKKATNGFSQQRFLGSGGFGEVYKGELQDGTLVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESELPFMIYEYISNGTLYDHLHGKYCSNFLNWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDDFNAKVSDFGLSRLASPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFSRDEDDVNLAIHVNQRASNGRIMELVDQRLLSVESSGDKMLTSIKVFLELALECLREKKAERPSMKDIVQRLLCIIRIEEGE 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02425 636 SUPERFAMILY Protein kinase-like (PK-like) 330 626 IPR011009 -
Vimu6g02425 636 Gene3D Phosphorylase Kinase; domain 1 310 426 - -
Vimu6g02425 636 Pfam Protein kinase domain 352 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02425 636 CDD STKc_IRAK 357 626 - -
Vimu6g02425 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vimu6g02425 636 Gene3D Transferase(Phosphotransferase) domain 1 427 634 - -
Vimu6g02425 636 SMART serkin_6 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02425 636 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 324 426 - -
Vimu6g02425 636 ProSiteProfiles Protein kinase domain profile. 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02425 636 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Vimu6g02425 636 FunFam Wall-associated receptor kinase-like 20 427 636 - -
Vimu6g02425 636 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 629 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02425 Vimu-Chr6 21179042 21181361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02425 38 632 Receptor kinase-like Gene Family AT5G02070 48.148 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu6g02425 Pkinase 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02425 - - gmx:100804678 1122.07