Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02415 TTGTATTCCTGTATCAGAACTGAACTATGCAGATTCAGTGGTGCCAAGATTTACCCAGGAAAAGGCATTAGATTTGTTCGCGGTGATTCTCAGGTTTTCCTCTTTGCCAATTCCAAATGCAAGAGGTATTTCCACAACCGCTTGAAGCCATCAAAGCTTACCTGGACTGCAATGTACAGGAAGCAACACAAGAAGGACATTGCTCAAGAAGCTGTGAAGAAGAGAAGACGTGCTGCCAAGAAGCCTTACTCTAGGTCCATTGTCGGTGCCACTTTGGAAGTTATCCAGAAGAAGAGAACTGAGAAGCCAGAAGTTAGAGACGCAGCTAGGGAAGCTGCCCTTCGGTGTGTTTTTGTTAATTCCTGCCCCTTCATTCCTGAAATTAAGGAGAGGATCAAGAAGACAAAGGATGAGAAGAAGGCTAAGAAAGCCGAAGTTGCAGCTAAGTCACAAAAAGCAGGAGGTAAAGGAAATGTTTCCAAGGGTGCTATGCCTAAAGGTCCCAAACTCGGTGGTGGAGGCGGCAAGCGCTGA 534 0.4607 MYSCIRTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALRCVFVNSCPFIPEIKERIKKTKDEKKAKKAEVAAKSQKAGGKGNVSKGAMPKGPKLGGGGGKR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02415 177 Pfam Ribosomal protein L24e 6 69 IPR000988 -
Vimu6g02415 177 CDD Ribosomal_L24e_L24 5 58 IPR000988 -
Vimu6g02415 177 ProSitePatterns Ribosomal protein L24e signature. 12 29 IPR023442 -
Vimu6g02415 177 SMART 4TRASH 10 48 IPR011017 -
Vimu6g02415 177 Gene3D - 71 117 - -
Vimu6g02415 177 MobiDBLite consensus disorder prediction 134 149 - -
Vimu6g02415 177 FunFam 60S ribosomal protein L24 5 66 - -
Vimu6g02415 177 PANTHER 60S RIBOSOMAL PROTEIN L24 6 169 IPR000988 -
Vimu6g02415 177 MobiDBLite consensus disorder prediction 134 177 - -
Vimu6g02415 177 Gene3D Ribosomal protein L24e 5 66 IPR038630 -
Vimu6g02415 177 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 8 60 - -
Vimu6g02415 177 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02415 Vimu-Chr6 21110930 21112130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02415 5 170 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 77.108 5.11e-79 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02415 K02896 - gmx:100499720 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02415 6 21110930 21112130 Vimu6g02415 6 21110930 21112130 ECH
Vimu6g02415 6 21110930 21112130 Vimu3g00891 3 10762661 10763586 PCT