Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02407 ATGAAACACCCTTCTTCCATAAACCTGTCACTGCCATTGTTGCCATTGGCATTGGCATTGGCCTTCACCATCTTCTGTGTTGCAGAGAGTGCATGGCAAAATGATACACTCGCCCTTACCCAATTCCGCCTTCAAACCGACACCCACGGCAACCTTCTCTCCAACTGGACCGGAGCCGACGCCTGCTCCGCCGCGTGGCTCGGCGTCGAGTGCTCCCCAAACGGCAGAGTGGTGGGCCTCTCCCTCCCTTCCCTCAACCTCCGTGGTCCAATTGATTCTCTCTCCTCACTAGTGTACCTCCGCTTCCTCGACCTCCACGAAAACCGCTTAAACGGTACCCTTTACCCCCTCTTAAACTGCACCTCCCTCGAACTCCTCTATCTCTCCCACAATGACTTCTCCGGCGAGATTCCGCAGCAGATATCCTCCCTCCGCCTCCTTCTCCGCCTTGACATCTCCGACAACAACATCCGCGGCCCAATCCCCAACCAAGTCGCCAAACTAACCCACCTTCTCACTCTTCGGTTGCAGAACAACGCTCTCTCTGGCCACGTCCCCGACATCTCCGCTTCCCTCCTCAACCTCACCCAACTCAACGTAACCAACAATGAACTTCGTGGCCACGTTCCCGATTCCATGCTTTCTAAATTCGGCAACGCCAGCTTCTCCGGAAACCACGCTTTATGTGGGTCCAACCCGTTGCCCAAATGTTCCGAAATCGAACCAGACACGGAGACCACAATAACCGTTCCTTCAAAACCGAGCTCGTTCCCTCAAACAAGCAGTGTGACTCTCTCTGACACTCCGAAGAAGAAAGGTCTGAGGGCGGGTGTCATTGTGGCCATTGTGGTGGCGGTTTGCGTGGCGGTGCTGGTGGTGATTTCATTCGTAGTGGCGCACTGCTGCGCGAGGGGAGGGGGAGGCTATGGGTCGGCGGTGGGGAGCGAAAGTTGGAAGAGGAAGAGTGGGAGTAGTTCTGGGAGCGAGAAGAAGGTGTATGGAAATGGTGGGAATTTCGATAGAGATAGCGATGGGACGAACACTGAGACGGAACGTAGCAAGCTGGTGTTTTTCGATAGGAGGAACCAGTTTGAGTTGGAGGATCTGCTTCGAGCATCGGCGGAGATGCTGGGAAAAGGGTGCTTGGGAACGGTTTACAGAGCGGTGCTCGACGATGGCTGCACCGTCGCAGTGAAAAGACTGAAAGACGCAAACCCCTGCGAGAGAAACGAGTTTGAACAGTACATGGACGTTGTAGGGAAGCTCAAACACCCCAACATTGTCAGACTCCGAGCCTATTACTATGCCAAGGAAGAAAAGCTTCTTGTGTATGATTATCTCCCCAATGGAAGCTTGCATGCTCTTCTTCATGGTAACCGTGGACCTGGAAGGATTCCATTGGATTGGACAACGAGAATAAGCTTGGTGTTAGGTGCGGCCAGAGGGTTGGCTAGGATTCATGCAGAGTACAACGCGTCCAAGATACCCCACGGGAACGTCAAATCCTCCAACGTGCTTCTCGACAAAAACGGCGTCGCATTGATCTCCGACTTCGGGTTATCGCTGCTGTTGAATCCGGTTCACGCGATCGCGCGATTGGGAGGGTACAGAGCGCCGGAACAGGTTGAAGTGAAGAGGCTGTCGCAGGAGGCTGACGTGTACGCTTTCGGGGTGTTGGTATTGGAGGTGTTGACTGGAAGGGCGCCGTCGACTCAGTACCCTAGTTCCGCGGCGCGTCCACGCGTGGAGGATGAGGGTGAGGTGGATCTTCCGAAGTGGGTTCGGTCGGTGGTGAAGGAGGAATGGACCGCTGAGGTGTTCGACGAGGAGTTGTTGCGGTACAAGAACATCGAGGAGGAGTTGGTGGCGATGTTGCACGTGGGAGTGGCGTGCGTGGCGGCGCAACCGGAGAAGAGGCCGAGTATGATGGAGGTTGTGAAGATGGTTGAGGATCTGAGGGTGGAACAGTCTCCTCTGGGAGAGGATTATGATGAGGCACGGTCACGCAATTCGCTTTCGCCGTCGCTCCCCACCACCGAAGATGGCCTTGCTTAA 2055 0.5509 MKHPSSINLSLPLLPLALALAFTIFCVAESAWQNDTLALTQFRLQTDTHGNLLSNWTGADACSAAWLGVECSPNGRVVGLSLPSLNLRGPIDSLSSLVYLRFLDLHENRLNGTLYPLLNCTSLELLYLSHNDFSGEIPQQISSLRLLLRLDISDNNIRGPIPNQVAKLTHLLTLRLQNNALSGHVPDISASLLNLTQLNVTNNELRGHVPDSMLSKFGNASFSGNHALCGSNPLPKCSEIEPDTETTITVPSKPSSFPQTSSVTLSDTPKKKGLRAGVIVAIVVAVCVAVLVVISFVVAHCCARGGGGYGSAVGSESWKRKSGSSSGSEKKVYGNGGNFDRDSDGTNTETERSKLVFFDRRNQFELEDLLRASAEMLGKGCLGTVYRAVLDDGCTVAVKRLKDANPCERNEFEQYMDVVGKLKHPNIVRLRAYYYAKEEKLLVYDYLPNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHAEYNASKIPHGNVKSSNVLLDKNGVALISDFGLSLLLNPVHAIARLGGYRAPEQVEVKRLSQEADVYAFGVLVLEVLTGRAPSTQYPSSAARPRVEDEGEVDLPKWVRSVVKEEWTAEVFDEELLRYKNIEEELVAMLHVGVACVAAQPEKRPSMMEVVKMVEDLRVEQSPLGEDYDEARSRNSLSPSLPTTEDGLA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02407 684 MobiDBLite consensus disorder prediction 317 332 - -
Vimu6g02407 684 MobiDBLite consensus disorder prediction 657 684 - -
Vimu6g02407 684 SUPERFAMILY Protein kinase-like (PK-like) 375 649 IPR011009 -
Vimu6g02407 684 Pfam Protein kinase domain 375 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02407 684 ProSiteProfiles Protein kinase domain profile. 371 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02407 684 FunFam Nuclear pore complex protein NUP107 32 187 - -
Vimu6g02407 684 Gene3D Ribonuclease Inhibitor 28 113 IPR032675 -
Vimu6g02407 684 MobiDBLite consensus disorder prediction 246 269 - -
Vimu6g02407 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 654 IPR046959 -
Vimu6g02407 684 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Vimu6g02407 684 MobiDBLite consensus disorder prediction 308 347 - -
Vimu6g02407 684 FunFam pollen receptor-like kinase 1 341 446 - -
Vimu6g02407 684 Gene3D Phosphorylase Kinase; domain 1 341 446 - -
Vimu6g02407 684 MobiDBLite consensus disorder prediction 246 268 - -
Vimu6g02407 684 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 447 661 - -
Vimu6g02407 684 SUPERFAMILY L domain-like 33 215 - -
Vimu6g02407 684 Gene3D Transferase(Phosphotransferase) domain 1 447 670 - -
Vimu6g02407 684 Gene3D Ribonuclease Inhibitor 115 239 IPR032675 -
Vimu6g02407 684 CDD STKc_IRAK 377 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02407 Vimu-Chr6 21069639 21072793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02407 33 680 Receptor kinase-like Gene Family AT2G36570 66.214 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu6g02407 Pkinase 3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02407 - - gmx:100808402 1090.1