Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02406 ATGGATTGGCATTACATCACAAAACCATTTCTTCCTCCCCCAGACACCTTAAGCTTCTTCTACAACTACAACAACAACCCTTATCCAGGAGTGGAAGTGAAACAGGCGACATTGTTGGAGACAGGAGAAGGTTCTATTCCGGCAAGGTACAACGGAAGCAAAGAGAAGAAGAAGCGGTTAACAAGCAACCAGTTAGAGTTATTGGAGAGGAGCTTCCAGGAGGAAATAAAGTTAGACCCTGAAAGGAAGATGAAACTTTCGAGGGAGCTAGGCCTTCAGCCTCGTCAAATCGCTGTTTGGTTCCAAAATAGACGTACGAGGTGGAAAACCAAGCAGCTTGAGCACTTATACAATGTTCTCAAGCACCAATATGATGTCATCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTAAGTAAAGAGGAAGGTTTTGGGAAGCAAAGATTGGGAGGTTATGAAGAAATATCAGGAGTAGAAACGGTAGAAAGCACTTCAGAGGGTCTAAGGGGTTCCAACAAGGCACAGGGAAAGAGTAACATTGAGCAGGTCGCAGATGAGGGCTTTTGCTCTTTCAGTGTGGAGGATTATAACACTGTTTCAGTGCCTTTCTTCCAGTGGCCTGTTGTGCCTTATTAG 657 0.4444 MDWHYITKPFLPPPDTLSFFYNYNNNPYPGVEVKQATLLETGEGSIPARYNGSKEKKKRLTSNQLELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYNVLKHQYDVISNEKQKLQEEVMKLKAMLSKEEGFGKQRLGGYEEISGVETVESTSEGLRGSNKAQGKSNIEQVADEGFCSFSVEDYNTVSVPFFQWPVVPY 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02406 218 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Vimu6g02406 218 FunFam Putative homeobox-leucine zipper protein ATHB-51 53 116 - -
Vimu6g02406 218 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vimu6g02406 218 SUPERFAMILY Homeodomain-like 46 113 IPR009057 -
Vimu6g02406 218 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Vimu6g02406 218 CDD homeodomain 54 112 IPR001356 GO:0003677
Vimu6g02406 218 Gene3D - 52 117 - -
Vimu6g02406 218 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Vimu6g02406 218 SMART HOX_1 53 115 IPR001356 GO:0003677
Vimu6g02406 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 169 IPR045224 GO:0003700
Vimu6g02406 218 Coils Coil 117 144 - -
Vimu6g02406 218 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Vimu6g02406 218 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02406 Vimu-Chr6 21055089 21056627 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02406 5 155 Homeobox Transcription Factor Family AT2G36610 44.318 2.35e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu6g02406 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02406 - - vra:106757543 415.231