Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02389 ATGGAATTGCCTGCCAGAAGATCCAGCAGCTACTCCCTCCTCAACCAAACGCCAGATGACAACTTAACCGTTTCATTATTCGACTCTTCCTCCGGCGACAGTAAAAACAACAGGAGCAAGTTGGAGAGAGTCTCCGATTGGGACTCCGTCGTCAATCACAGGCAGGGGAACAGGATCGGGAATTTGTACTCCTCTTTCGGGTTCGGGATGCAGCGGCAGTCAAGTGAGAGCAGTTTTGGTGAGAGCTCACTCTCCGGCGAGTTTTACGCTCCCACTATGTTCACTGTGACACCTGATGAGACAGACAAATTCACACTTGGAGAGGTTAGAGGCAGGATTTCGGACGCCGGGCCGGCGAGGAGCGGCGGGTCTTTTGGCAAGAGCTGGGCGCAGCAGACTGAAGAGAGTTATCAGTTACAGTTGGCATTGGCTCTTCGACTTTACTCGGAGGCCACGTGTGCTGATGATCCCAATTTTCTGGATCCTGAACCCCATGAATCATCTTCAAGGTCATCGTGTTCTGCAGAGACAGTTTCCCATAGATTTTGGGTAAATGGCTGCCTACTGTACTTCGACAAAATTCCTGATGGCTTTTATTTAATTCATGGAATGGATCCCTATTTATGGACTGTGTGCACTGATCTACAGGAAAATGGCCGAATTCCTTCAATAGAGACACTAAAATCTATAGATCCTTCGACCGTTTCTTCACTTGAAGTAATTTTGGTGGATAGACAGCGTGATCCTATCTTAAAAGAATTGCAGAACAAGGTACATGACATTTTTTGTCGCAGCAAAGTAACAACAGATGTTGTAGACCAGCTTGCAAAGCTTGTATTCGATTGTATGGGGGGTTCAGCTTCTGTATGGGAAGGCGATCTTTTTCCCGTATGGAGGGAGTGCATTAATGATCTAAGAGATCGCATAGGATCTGTTGTTGTTCCAATTGGCAGCTTATCTACTGGACTTTGCAGGCATCGTGCTGTATTATTCAAAGTGCTAGCTGACACCATTGGTTTACCGTGTCGAATTGCAAAGGGTTGTAAATATTGTTCAAGAGAAGACGCCTCTTCATGCCTTGTTCGGTTTGGGCTTGACAGGGAGTATATGGTTGATCTAATTGGAAAGCCTGGTTACTTATGTGAGCCCGATTCCTTGCTGAATGGTCCATCCTCCATCTCATTTTCTTCACCCTTGCGCTTTCCAAGACTCAAACCAGCTGAACCTACCATTGATTTCAGGTCACTGGCCAAACAATATTTCTCGGATAGTCTGCCTAGTGAGATTGTCTTCGATAGTGGTGTTGCAGTGTCTGTTATTGATGTAGATTTTGGATTCTCCTTTCCAGAACAGTATGAAAGGCAGTACAGGGACCCTGGACCAATTTCAAATGATAACAACAAAAGTTCTCTTGTTCCTCCACAACCACAAGCTTATCGTCCAAGTGAACATGATCGAGGCTCCGAAACATTTAAATCAGCTAACCCTCCACAGAATGTTGTTGGGCCGCCACTGACAAGCAAGGATTCATTGCTTTTAAAGCATAATCGTCCTGGTCATAGAGATACACAGACCCGGTTAATGATTTCTAGCAAACCATCTAGAGAGTTTTCTGTAGATATGGAGGATCTGGACATCCCATGGACTGATCTTGTTTTGAAAGGGAGAATAGGATCAGGACCGCAGGAGGTTGCTGTGAAAATTTTGATGGAACAAGACTTTGCAGGTGAACGCTTCCAGGAATTTTTGAGGGAGGTTGCAATAATGAAAAGTTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCCAATTTATCAATTGTCACAGAATACTTGTCCAGGGGTAGCTTGTACAGGCTGTTGCATAAACCTGGTGCCACAGAAATGTTGGATGAGAGACGTAGGATAAGTATGGCTTATGATGTGGCTAAGGGGATGAATTATCTTCATAAACGTAATCCTCCCATTGTTCACAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTTAGTGATTTTGGGCTTTCCCGACTAAAGGCAAACACATTTCTCTCATCCAAGTCAGCTGCTGGGACACCTGAGTGGATGGCTCCAGAAGTTCTTCGTGATGAGCCATCCAATGAAAAGTCAGATGTTTACAGCTTTGGTGTCATCTTGTGGGAGCTTGCAACACTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAAATACCACGAGATTTAAATCCTCAAATAGCATCAATAATTGAGGCTTGCTGGGCCAACGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTCTTTGAAAGGATTGATCAAACCCCCTGTACCTCAACCTGGTCGTCCAAACATGTCGTTACTCATTTGA 2439 0.4465 MELPARRSSSYSLLNQTPDDNLTVSLFDSSSGDSKNNRSKLERVSDWDSVVNHRQGNRIGNLYSSFGFGMQRQSSESSFGESSLSGEFYAPTMFTVTPDETDKFTLGEVRGRISDAGPARSGGSFGKSWAQQTEESYQLQLALALRLYSEATCADDPNFLDPEPHESSSRSSCSAETVSHRFWVNGCLLYFDKIPDGFYLIHGMDPYLWTVCTDLQENGRIPSIETLKSIDPSTVSSLEVILVDRQRDPILKELQNKVHDIFCRSKVTTDVVDQLAKLVFDCMGGSASVWEGDLFPVWRECINDLRDRIGSVVVPIGSLSTGLCRHRAVLFKVLADTIGLPCRIAKGCKYCSREDASSCLVRFGLDREYMVDLIGKPGYLCEPDSLLNGPSSISFSSPLRFPRLKPAEPTIDFRSLAKQYFSDSLPSEIVFDSGVAVSVIDVDFGFSFPEQYERQYRDPGPISNDNNKSSLVPPQPQAYRPSEHDRGSETFKSANPPQNVVGPPLTSKDSLLLKHNRPGHRDTQTRLMISSKPSREFSVDMEDLDIPWTDLVLKGRIGSGPQEVAVKILMEQDFAGERFQEFLREVAIMKSLRHPNIVLLMGAVTKPPNLSIVTEYLSRGSLYRLLHKPGATEMLDERRRISMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVSDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWSNLNPPQVVAAVGFKGKRLEIPRDLNPQIASIIEACWANEPWKRPSFSSIMDSLKGLIKPPVPQPGRPNMSLLI 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02389 812 Gene3D Transferase(Phosphotransferase) domain 1 619 801 - -
Vimu6g02389 812 MobiDBLite consensus disorder prediction 460 476 - -
Vimu6g02389 812 MobiDBLite consensus disorder prediction 491 505 - -
Vimu6g02389 812 SUPERFAMILY Protein kinase-like (PK-like) 533 791 IPR011009 -
Vimu6g02389 812 Pfam Protein tyrosine and serine/threonine kinase 559 792 IPR001245 GO:0004672|GO:0006468
Vimu6g02389 812 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 168 795 - -
Vimu6g02389 812 FunFam Serine/threonine-protein kinase CTR1 619 802 - -
Vimu6g02389 812 CDD STKc_MAP3K-like 562 792 - -
Vimu6g02389 812 Pfam Ethylene-responsive protein kinase Le-CTR1 175 381 - -
Vimu6g02389 812 PRINTS Tyrosine kinase catalytic domain signature 719 741 IPR001245 GO:0004672|GO:0006468
Vimu6g02389 812 PRINTS Tyrosine kinase catalytic domain signature 614 627 IPR001245 GO:0004672|GO:0006468
Vimu6g02389 812 PRINTS Tyrosine kinase catalytic domain signature 763 785 IPR001245 GO:0004672|GO:0006468
Vimu6g02389 812 PRINTS Tyrosine kinase catalytic domain signature 700 710 IPR001245 GO:0004672|GO:0006468
Vimu6g02389 812 PRINTS Tyrosine kinase catalytic domain signature 655 673 IPR001245 GO:0004672|GO:0006468
Vimu6g02389 812 SMART serkin_6 551 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02389 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Vimu6g02389 812 MobiDBLite consensus disorder prediction 455 521 - -
Vimu6g02389 812 Gene3D Phosphorylase Kinase; domain 1 544 618 - -
Vimu6g02389 812 ProSiteProfiles Protein kinase domain profile. 526 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02389 Vimu-Chr6 20903956 20918703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02389 1 808 MAP Kinase Kinase Kinase AT5G03730 61.118 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu6g02389 PK_Tyr_Ser-Thr 2.9e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02389 K14510 - gmx:100810555 1289.25