Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02388 ATGAACCCAAGACAACAAAGTCATCCTCAACTCGTACCAGAGGGACCAATTGCCTTCTCCACCACTCTCTTGCGTTCTCATGAAGCATTCCCATCATGCTCTTTTCCTCGTCACAATTCAGCTTCTCTTCCACCACCCGACATTGCTCTTTCTGCCTCTCAACCACAGTCTTCCACTCCCTCTCCTTCTTCCAAGTCGCCTTCATCAACAGCAGAGTTTGAGAAGGTAATTACTTTGCCGCATCCGCTTGAATGTTTACAAGGGAATCCGGTTCCAGCATTCCTATCCAAGACTTTCGACCTCGTTGACGATCCATCGTTGGATCCGATCGTATCATGGTCCTCCGCTGGTGTTAGTTTCGTGGTGTGGGATCCTACCCTGTTTGCAATACATGTCTTGCCCAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACCTATGTGGGGATTTCATCCTCAGCAGATAGTGTTCCACGTTTCCTTTTCTGTGCTGCCAGCCAAGACTTGCTTTGTCAGCGTGATCATTACCCTGGATTCCGCAAGATTGACTCTGATAAGTGGGAGTTTTTTAATGAAGCTTTTCAGCGAGGGAAGAGATATCTTCTGAAGAACATCCGAAGGCGCAGACATCCTCCTCATCCCCATCAAGTTGGTAGGCATATCGTGCATTGGTCTGATGCAGGTAAGGCTGGGCTTGAATTTGATATAGAAAGACTAGGGAAGGAGAAGAGTGTGTTAATGCAAGAGGTAGTTGAGTTGCGGCAACAGCAAAGAGCAACACTTCACCGTGCTAGACAAGTTAATCAGAGGCTCCAATCTGCAGAGGTGATACACAAACAAATGCTTTCTTTCTTGGCAAGGTTACTTGAAAACCCTGCGTTGTTAACATGCCTTCAGCATGAGAAAGAACAAAGAGATGTAGAATCTCCTAAAGTGAGAAGGATGTTTGTCAAACAGCACCAAGAACGAACAGGAATATCAGATTTTTTGAAGGAAGGACAGATTGTAAGTCACCAACCTGATTGGAGAAATGTAACAATCTCTTCCAAAATACCAGAAATGTGTCCAACTTCCCTTGGAGGGTGTTCAAATTATCTTTCACAGGATTTGGCAAAAGAATTGAGTGAAGGTGGTGAGAATCTGGTGTCAGATGGATTGGCCCCCGTGCACGATGTTATGCCAACCTCTGACACCATTGGTTTAAAGTCATCAAGCTTTGGACTTGAAGATACCCTTTTGAAAGGAAAAAATGTCATGAGCTCAAATCAAGAAGATCTTCTTGCAGAGGAGATTGTTTCTTTCCCAGAGAATTTGACTAATGAGGCTGGATTTCCAGAGTTTTCACCTCTAGTTGGAACAGAAAGCATTATCAAGCCAGAAGATAAATGGAACACCAGATTTCATTTCAATGGCGCTCCTACAAGCTCTAGGGATTCACCAGCTATCAACCATGAAGAACAAGAATTTAGATTCACAAGTGGTATTTCAGACAAGTGGGATATTTGTTCACTGTGGGCAACACAAAGTTTCCGAACTGATGATCCAGCACTGGATGAATGA 1575 0.4387 MNPRQQSHPQLVPEGPIAFSTTLLRSHEAFPSCSFPRHNSASLPPPDIALSASQPQSSTPSPSSKSPSSTAEFEKVITLPHPLECLQGNPVPAFLSKTFDLVDDPSLDPIVSWSSAGVSFVVWDPTLFAIHVLPRNFKHNNFSSFVRQLNTYVGISSSADSVPRFLFCAASQDLLCQRDHYPGFRKIDSDKWEFFNEAFQRGKRYLLKNIRRRRHPPHPHQVGRHIVHWSDAGKAGLEFDIERLGKEKSVLMQEVVELRQQQRATLHRARQVNQRLQSAEVIHKQMLSFLARLLENPALLTCLQHEKEQRDVESPKVRRMFVKQHQERTGISDFLKEGQIVSHQPDWRNVTISSKIPEMCPTSLGGCSNYLSQDLAKELSEGGENLVSDGLAPVHDVMPTSDTIGLKSSSFGLEDTLLKGKNVMSSNQEDLLAEEIVSFPENLTNEAGFPEFSPLVGTESIIKPEDKWNTRFHFNGAPTSSRDSPAINHEEQEFRFTSGISDKWDICSLWATQSFRTDDPALDE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02388 524 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 80 327 IPR027725 -
Vimu6g02388 524 Gene3D - 87 214 IPR036388 -
Vimu6g02388 524 Pfam HSF-type DNA-binding 94 213 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g02388 524 MobiDBLite consensus disorder prediction 35 71 - -
Vimu6g02388 524 PRINTS Heat shock factor (HSF) domain signature 132 144 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g02388 524 PRINTS Heat shock factor (HSF) domain signature 145 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g02388 524 PRINTS Heat shock factor (HSF) domain signature 94 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g02388 524 SUPERFAMILY "Winged helix" DNA-binding domain 89 213 IPR036390 -
Vimu6g02388 524 SMART hsfneu3 90 213 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g02388 524 Coils Coil 241 261 - -
Vimu6g02388 524 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02388 Vimu-Chr6 20891310 20893414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02388 79 369 HSF AT5G03720 45.763 2.79e-73 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu6g02388 HSF_DNA-bind 3.3e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02388 K09419 - gmx:100788429 545.814