Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02387 ATGAATATGGAGAGTACGCGCAGATCGTTGGATAGATCTAGAGAACTGGGTTCCAAGAAGCCTCGATTGATCGACGAACTCAGCGCCCGACAGTTACCTCAAAGACAGCAAGGGTCGGGGATAGTTACTTCCTTGGTGTCTGCAAGGGCTCGAGTAAATGACAGGGACACCGAAAGCAGCGAATCAAGTCGCGGCGGTGGGTACCAGCCTCAGTCACAGCCTCACCATGAGCTTGTGACTCAGTATAAGACTGCGCTCGCTGAACTTACTTTCAATTCCAAGCCCATAATTACAAACTTGACTATTATTGCTGGGGAGAATCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGAGATTATATAAAGTATTTTGCTGTCAGATTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGCATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAAGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAAAGTCAAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACGTGCTTAATAATCAGCAAACACAGAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGGTCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGCGCTGGAAGGACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAGACAGATGGTGGTGATGCAGAGACCATATCTGGTCAAAAAAACGGTTTCAGTCTCAAGCGTAGTCTTTCAAATCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACATCGTCAGCCAGGCCTAAATTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACCGATCATGGACCTAATGTGTCTAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGTAAGCTTGCTAAAAGGGTCAGTTGCACCGCCATTGGTTTGCGATTTTTCTCCTAATTTACAAAATGAAATACATTCCTTTGAAGGTGAAGACCTGCATATTCTACACCCTTACGGGGAAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCACCACACAATTGATAAGTTGGCACTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTCTTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTGTCAAGAAGGGGAACCAATCTCTTACGTCAAAGGCAATAGTAGGAATGTCCAAAATTGTAGAGCAACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTCACAACGACAGTCTCCATCACTACCAGGAACAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAGGAAATGCCCCAGGATCTCAAAACATCTCAATTTTTGGGAGGTCCAACTAGTCAGCACATTAGAGATCGCTCACCTACCCTTCGTCCTGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAAACAAAGCTTCAGCCACAGCAGCTCGACTCTTCTCAGGCTGAAGTTTTTGCTAAAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAAAGGAGTTTCAGAACAGTCGACCAAAAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCCGGTAGGTCTACTCCTGCCACATTAATTTCTTCAGGGTCTGCAGTGACATCACCATCTTTATTGGATCCTCTGCACAAAGATTCATCTTCACTGCCCAAAAAACCTCAAGGAAAGGTTGGACAACCGCCACAAAGGCTTTCTACTCAACCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAATAATGTAAACCCTATTGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCACCGACTGTGGTACCAAGCAAGGTGCTGAAGGGATCCAAAGATAAAACTGTAAACATCAGCACCAGTAGCTCTTTCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGCATCATCTGCCAGAGATGAGGAAGACGCTTCTACAAAATCCTCTCTACCCTCGTCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCCCTCATCATTGCAAAATTTGCGGTATTAGGTTTAAACAAGAACAACAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAATGAATCCAGAAGTTGGTATGCTAAGTCAAGTGATTGGATTGCTGGCAAGGTAGAATACTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGACAGCAGTCAATTGGATACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTATTATGTGGCGAGCTATTTGAAGATGTGTACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTGCTCGGATATAAATGATGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATTGTCACCAATTTGGTAAGAGACCTGGTAATGATTAATGGTTTGCCTCTAGCATTACGCTATGGTGTAGTCAAAAGCTTACCAAGG 3204 0.4341 MNMESTRRSLDRSRELGSKKPRLIDELSARQLPQRQQGSGIVTSLVSARARVNDRDTESSESSRGGGYQPQSQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLKSNEDSERPNRALGASRPWLDPRINVLNNQQTQRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSNREAPKSINLKAHRQPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLVSLLKGSVAPPLVCDFSPNLQNEIHSFEGEDLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLALKPGYSEGFVSTLSGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGETESPSGQSPSQRQSPSLPGTVYHPHSMQNLPEQEMPQDLKTSQFLGGPTSQHIRDRSPTLRPVVQVGNMRRTQEKDMQGTFQTKLQPQQLDSSQAEVFAKTKLPQSKVSLTKGVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSTPATLISSGSAVTSPSLLDPLHKDSSSLPKKPQGKVGQPPQRLSTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAETESPTVVPSKVLKGSKDKTVNISTSSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSSQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFPHHCKICGIRFKQEQQYKRHLEWHATREHGPINESRSWYAKSSDWIAGKVEYSSELEFTDSVVVHDKETDSSQLDTMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCSDINDEMESRNVGPIIHAKCLSENSIVTNLVRDLVMINGLPLALRYGVVKSLPR 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 764 782 - -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 828 866 - -
Vimu6g02387 1068 Pfam CID domain 83 192 IPR006569 -
Vimu6g02387 1068 ProSitePatterns Zinc finger C2H2 type domain signature. 903 923 IPR013087 -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 30 46 - -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 1 76 - -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 62 76 - -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 702 782 - -
Vimu6g02387 1068 SUPERFAMILY ENTH/VHS domain 74 202 IPR008942 -
Vimu6g02387 1068 CDD CID_Pcf11 79 189 IPR047415 -
Vimu6g02387 1068 ProSiteProfiles Zinc finger C2H2 type domain profile. 901 928 IPR013087 -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 605 628 - -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 1 26 - -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 828 844 - -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 719 747 - -
Vimu6g02387 1068 SMART 558neu5 77 199 IPR006569 -
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 605 621 - -
Vimu6g02387 1068 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Vimu6g02387 1068 FunFam polyadenylation and cleavage factor homolog 4 71 199 - -
Vimu6g02387 1068 Gene3D - 68 199 IPR008942 -
Vimu6g02387 1068 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 49 1038 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vimu6g02387 1068 MobiDBLite consensus disorder prediction 561 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02387 Vimu-Chr6 20881490 20887119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02387 49 472 C2H2 Transcription Factor Family AT4G04885 34.396 7.48e-54 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g02387 CID 1.9e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02387 K14400 - gmx:100788958 1520.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02387 6 20881490 20887119 Vimu6g02387 6 20881490 20887119 ECH