Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02383 ATGGAAATGGAGGACCATCATCATCATCATCATCATCATCATCATCAACACCATGAACAGCAGCAGCAGCAGCAACAGTATGCCATCACTGATCTAAGGCAACTCATGAACGGCCCGAGGTCCACCCATTTCCCCTCCATGCCGCCGCAGCCCAAGGCGGAGCTGTTCCCCGGCGGCCACCCCAACCTGGCCGCCTCCCAGCACTTCGAGATGATGATGTTTGGTCGTCAAGTGGCCGACATAATGCCCCGGTGTCTTCATGACTTTGCATCTACAGATTCCGCCACGAATAATAACAACACGAGCATCGCTGCTGCCACTCCCACCACCACAACTAGTGCTTCCACTCCTCCGCTTAGTTGCTTAGAGGGTGAGACCGCAGGATGCATCGGTGGAGATGCCTCCACTGGAAGATGGCCCAGACAAGAGACACTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGCGGGAAGAAGTGCCGGGAGAAGTTTGAGAACCTCTACAAATATTACAAGAAGACAAAGGAGGGAAAAGCAGGAAGACAGGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAACCTCGGTACCAGAAGCCAATTTTGGTAGTGGCAGCCTTCGTTTCCACTCAAACAGCCACAACCCTTCTCAAACAAATCAAGAAATGTTTCACTCCCAGAAGCATTGCGATAGCCTAAGTCTCACCAACACCACTGATTTGGACACGTCATCATCGGATGACAACGATCAGAATAGCACTGGGGGACTCAAGGACAATGATTCCACGGAGAAGAGGAGAAAGAGGTTGGGCGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGACAAACTCACGAAGACACTGGAACAGAAAGAAAAGGAGAGGGTGCTAAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGTAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTACAAAAACTAACAGGAAATGAGATGATAAAGAGTACTCAATCTCCTGAGGGTGTAATGGTAACAGGAATTCAGAACCACAGTGAAAACCTGAATGAAGATGGGAGTGAAATACTAAATAGTACCACCGCAAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTACTAGGCTTCAGCAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGTTTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTAGTGTTCAAAGAGAAATGGGAAAGTACCAGCAACTACGCAAGGAATGCTAAAGATGGAAACAAGAAGCGCAAGGAAGACTCAAGAGGTTGTTTCTACTTCGATAACAGCGAACAGTCTTCCCTGTATAACCAAGGAGGAGCCTATTGTGATATTAATGATCAAAGGCACGAGAGGAGGCTACAAAATGATGGTTCTTCGCCTTCAAATTCAAATGTTGGAAATGCAGTTGCTGGTGATCACTGCTTTCCCTTCTTGATGACTGAGAGTGCAAATTTGTGGGAGAACTATAGCTTAAAGGGCACCGATGATGATAAAGTGGTCAATCTTATTATATTTATGGGAATCAAGGTGAAAAATAATGTATTCAAGTCACAAGGATCAATAAATGTTATCCAGCAAGTAACTGCACGGGAATTCTCTATAGCCATTCAGCTCTCAGTTTTAATGTGTGGTCCTGACAGTATCCGTACCTGGGAAAGAGTAAAGAAGTTTCCTGCTAAAGGAAAACCAAATGCAAGGGTTGGGGAGACATATTGGCAGTCCTTATCATAA 2007 0.4569 MEMEDHHHHHHHHHHQHHEQQQQQQQYAITDLRQLMNGPRSTHFPSMPPQPKAELFPGGHPNLAASQHFEMMMFGRQVADIMPRCLHDFASTDSATNNNNTSIAAATPTTTTSASTPPLSCLEGETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQTSVPEANFGSGSLRFHSNSHNPSQTNQEMFHSQKHCDSLSLTNTTDLDTSSSDDNDQNSTGGLKDNDSTEKRRKRLGGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAVRLEREHKFWAKERAWIEARDAALMEALQKLTGNEMIKSTQSPEGVMVTGIQNHSENLNEDGSEILNSTTARGAESWPESEITRLQQLRAEMETRYMQSGCSEEFMWEEIATKMACFGYERSALVFKEKWESTSNYARNAKDGNKKRKEDSRGCFYFDNSEQSSLYNQGGAYCDINDQRHERRLQNDGSSPSNSNVGNAVAGDHCFPFLMTESANLWENYSLKGTDDDKVVNLIIFMGIKVKNNVFKSQGSINVIQQVTAREFSIAIQLSVLMCGPDSIRTWERVKKFPAKGKPNARVGETYWQSLS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02383 668 Gene3D - 139 201 - -
Vimu6g02383 668 Gene3D - 438 500 - -
Vimu6g02383 668 ProSiteProfiles Myb-like domain profile. 131 196 IPR001005 -
Vimu6g02383 668 PANTHER FI21293P1 72 550 - -
Vimu6g02383 668 FunFam Trihelix transcription factor GT-2 438 500 - -
Vimu6g02383 668 CDD GT1 438 502 - -
Vimu6g02383 668 FunFam trihelix transcription factor PTL-like 139 201 - -
Vimu6g02383 668 MobiDBLite consensus disorder prediction 229 307 - -
Vimu6g02383 668 MobiDBLite consensus disorder prediction 229 295 - -
Vimu6g02383 668 Pfam Myb/SANT-like DNA-binding domain 138 224 IPR044822 -
Vimu6g02383 668 Pfam Myb/SANT-like DNA-binding domain 437 520 IPR044822 -
Vimu6g02383 668 MobiDBLite consensus disorder prediction 93 118 - -
Vimu6g02383 668 CDD GT1 138 203 - -
Vimu6g02383 668 MobiDBLite consensus disorder prediction 1 25 - -
Vimu6g02383 668 Coils Coil 328 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02383 Vimu-Chr6 20837493 20842345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02383 21 584 Trihelix Transcription Factor Family AT5G03680 45.289 1.96e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu6g02383 Myb_DNA-bind_4 7.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02383 - - gmx:100813245 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02383 6 20837493 20842345 Vimu6g02383 6 20837493 20842345 ECH