Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02382 ATGCTGGAGGTGGTGAAAATGGTGTCTGCAAACATATTCAGGACACTCAGTCCTCAGCCATGCGAGAATAAGATCGTTGATGGTGCTGATGTGGAGGAGGAGGAGCCTTCGCTGGATCCCGCTTGGCCTCATTTGCAGATTGTGTATGAGCTTTTTCTGCGGTTTGTGGCCTCACCTGAGCTGGATCCAAAGTTGGCTAAGAGATACATTGATCAGTCTTTCATTTTGAAGCTGCTGGATTTGTTTGACTCCGAGGATCCGAGGGAGCGGGAGTACTTGAAGATGACTTTGCACCGTATCTATGGCAAATTCATGGCGCATCGCCCTTTCATCAGGAAGGCCATCAACAATGTGTTTTTTAATTTTATTTTTGAGACTGAGAAGCATAATGGGATTGTCGAATTCTTGGAAATTCTTGGGAACATCAGTAATTGTTTTGCGTTGCCATTGAAGGAAGAGCATAAATTGTTTCTTGTTCGCATCCTGATTCCTCTGCACAAGCCAAAATGCCTGGCAATGTATCATCAGCAGTTGTCGTATTGCATTACTCAGTTTTGCGTGCACTTAGAACCATTGCCATGCTCCATTGTGGAGTACAGAAAGGGACACTGCTCTGAATCTCTCAGATGGAAGTTCATCAACAACTGGTTTGCACTTCCATCTCAGAACTCCTTCTCCAGCCATCGCAATTCTAACCCCAATAAATGGCTCCCCTCAACTGTCAACTGCCATCATCCAACTTCTTCAACCTTCACCTCAGATATCCCTTACAAATCCCCAGTTTCTCCAACCATTTTCCTTCACATCACCACCATGCGTTCCACCAACGCTACCACATGTGCTGCATCAAGCACCGGACCCTCTAACGCTAACACAGGGCGCCACCCTGTGTACCGCGGAGTGAGGCGTAGGAGCAGTGGAAAATGGGTTTCTGAAATCCGTGAGCCCAGAAAACCTAACAGGATTTGGTTAGGGACATTTGCCACCCCTGAAATGGCGGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGGAAGGATGCCGAACTCAACTTCCCTGACTCCGCCTCTTCTCTTCCCGTTCCTGCTTCATCCGCTGCTCGTGACATTCAGATGGCTGCGGCCAGTGCTGCAGCCGCCGTCGGAGCAGCTAATGATGCACTGAGTGAGGGAAGCCGAGGAGGGAATGTTTCGGTTTCAATGGCACAAGAGTTTTCAGGGGGAAGCTTAAACCACTTCGTGGATGAGGACTTGATCTTTGACATGCCGAATATTCTGGTCAACATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGACAATTTTTCTGCCACAGATTATGACTACATGGATGAAAATCCTAATCTCTGGGGCTTCCCTTACTAG 1392 0.4813 MLEVVKMVSANIFRTLSPQPCENKIVDGADVEEEEPSLDPAWPHLQIVYELFLRFVASPELDPKLAKRYIDQSFILKLLDLFDSEDPREREYLKMTLHRIYGKFMAHRPFIRKAINNVFFNFIFETEKHNGIVEFLEILGNISNCFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFCVHLEPLPCSIVEYRKGHCSESLRWKFINNWFALPSQNSFSSHRNSNPNKWLPSTVNCHHPTSSTFTSDIPYKSPVSPTIFLHITTMRSTNATTCAASSTGPSNANTGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPDSASSLPVPASSAARDIQMAAASAAAAVGAANDALSEGSRGGNVSVSMAQEFSGGSLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDNFSATDYDYMDENPNLWGFPY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02382 463 Gene3D AP2/ERF domain 297 355 IPR036955 GO:0003700|GO:0006355
Vimu6g02382 463 SUPERFAMILY DNA-binding domain 297 356 IPR016177 GO:0003677
Vimu6g02382 463 SMART rav1_2 297 360 IPR001471 GO:0003700|GO:0006355
Vimu6g02382 463 SUPERFAMILY ARM repeat 3 186 IPR016024 -
Vimu6g02382 463 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 3 186 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu6g02382 463 FunFam Ethylene-responsive transcription factor 2 296 355 - -
Vimu6g02382 463 PRINTS Ethylene responsive element binding protein signature 336 356 IPR001471 GO:0003700|GO:0006355
Vimu6g02382 463 PRINTS Ethylene responsive element binding protein signature 298 309 IPR001471 GO:0003700|GO:0006355
Vimu6g02382 463 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 3 188 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu6g02382 463 Gene3D - 1 199 IPR011989 -
Vimu6g02382 463 ProSiteProfiles AP2/ERF domain profile. 297 354 IPR001471 GO:0003700|GO:0006355
Vimu6g02382 463 Pfam AP2 domain 296 346 IPR001471 GO:0003700|GO:0006355
Vimu6g02382 463 CDD AP2 298 356 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02382 Vimu-Chr6 20817236 20825555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02382 286 462 AP2-EREBP Transcription Factor Family AT2G36450 62.842 5.83e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g02382 B56 4.4e-84 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02382 K11584 - gmx:100797758 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02382 6 20817236 20825555 Vimu6g02382 6 20817236 20825555 ECH