Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02376 ATGGACTTGCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAGCAACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTACCAGCTACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATCTTCAGGTACATGTTAGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTTCATCACCCTCTCCAACATTACCAACCTGCTTTGCTGCAATCTGGGTATTGGGGTAGAGGAGCGATGGATCCAGAACCAGGGCGGTGTCGGAGAACTGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAAGTAGTGCTAATTGCGGTGGTAGTGGTGGTGGTGGTGGAACTCTAGGACTAGGTGCTTCATCTTCCATTTCTTCACCTCCGCTAGCTACTGCTTCTCTGAAATCCCCTTTTGATCTTCTTCATCTTAGTGAACGCTCCTCTGGGACCAAGAATGAAGACAAGAGCTTGTTTGAAAATGAAGATAATGTGGGTGGGGATGGCAGAGCAGGTGGGCATATGCTGAGGCATTTTTTCGATGATTGGCCAAGATCACTGCAAGACTCTGACAACGTTGAAAACAATGCTGCCCCTGCCCGGATCAACTCTTCCACATGCCTCTCTATTTCTATGCCCGGAAATGCTTCTTCAGATGTCTCTTTGAAATTGTCCACGGGCCCAACAAATGAGAATGTCAATCTCCAGCCGGACCAACTGCAGTTGAATTGGGCCGGAGGATGGGCCGGAGGTAGTCAAGTGGCTTCAATGGGTGGGCCACTTGCCGAGGCACTCAGATCCTCTACTTCAACTTCATCTCCTACTAGCGTTTTGCATCACTTGCCTCCTGCTTCTGGATCTCAGACCACCTTTGTTACCACCTGA 1143 0.4926 MDLHLKQWRNQHESEEQHSTKMPKLLPESHQQQQTQSSASALPLFVPEPNSKVSTLSDSTLPATNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPSSANCGGSGGGGGTLGLGASSSISSPPLATASLKSPFDLLHLSERSSGTKNEDKSLFENEDNVGGDGRAGGHMLRHFFDDWPRSLQDSDNVENNAAPARINSSTCLSISMPGNASSDVSLKLSTGPTNENVNLQPDQLQLNWAGGWAGGSQVASMGGPLAEALRSSTSTSSPTSVLHHLPPASGSQTTFVTT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02376 380 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu6g02376 380 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu6g02376 380 PANTHER GROWTH-REGULATING FACTOR 5 32 305 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vimu6g02376 380 MobiDBLite consensus disorder prediction 170 207 - -
Vimu6g02376 380 MobiDBLite consensus disorder prediction 24 39 - -
Vimu6g02376 380 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu6g02376 380 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Vimu6g02376 380 MobiDBLite consensus disorder prediction 1 39 - -
Vimu6g02376 380 MobiDBLite consensus disorder prediction 1 23 - -
Vimu6g02376 380 Pfam WRC 142 184 IPR014977 -
Vimu6g02376 380 MobiDBLite consensus disorder prediction 351 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02376 Vimu-Chr6 20731960 20734872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02376 1 367 GRF Transcription Factor Family AT3G52910 51.813 5.44e-99 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vimu6g02376 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02376 - - gmx:100814842 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02376 6 20731960 20734872 Vimu6g02376 6 20731960 20734872 ECH