Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02366 ATGGGTTCATTCTCTGGCACTTCTGAAATAGTTGAGGCAAGGGAGGAGCTGAATACAAGGAAAGCTCCTGGGATTTATCAGTACAATTCTGAGTGTAGCACGTCTGAGAAAAGTTACAAACTTTCGGTGCTGAAACTGGGATGCAAGGATGATCTAGACGATGATATTAATAAGCTGTTTGAATCAATTGCTCTTAAGTCTTCGTCAAGGGATTTGGGTCTCTTACAAGACGGTGCAAGTCCTAGACTGAAAAGTGCGTTAAAAAAGCCAATTACAATGGGTGTTCCTCGGTCCCCAAGAGTTGGAGCTTCTGAGTCTGTTAATTTAAAGCAAGCATTAAGAGACCTTTGCATATCTAAGGCATCGGAAATGGCTGCTATGAAACGATTATCAAAGTCAACAGCTTCTCCAAGAATATCTGAAGTTGGGAAGATACAGACATTGTACAATTCAGTTGTAGCTGAAACCAATCGGCCTGGGCCTTCCTCTGTTGAAAGCAAGGAGCGTCAAATTGAAGTAGCTCTTGTACCAGAAAAAAGTAAGTCCCTTTCAATGGTGAAAACCTCTCAATCTTATCAAGCTGCCCAAATCGCGTCGTCGAGCCGAAACATTCGTTCGTCTCGGCAAGTTGCTGTTGCCACCACTCAGTATGATTCTGGGACTTCATTGGTACAAAATGATTTGGCATGCCCATCAAGTAAAGTTGGAATTCAGTCACAAAGAGTGGTACCTGTTGAATTAGAAGAACAAGCATCCGCCTCTTCATCTTCTATTCTTAATACAATTGGAAGCAAGCTAGAGGTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTGGGTAATAAAGCATTTGTGTCAAATAACGGGAAGAAAGGTAGACCGCAAACTGAATCTTCATCTACTTCTGCAAATGGCAACAGAGTTAACAAACTGCCACGCCATGCCCCCCGCACTGTTAAATCGGTCATCAAGAACAAGAATCTGACTAAGAAGAAACCAAAGGAGGATTCGGGTTCTGCTTTATGTGGTCCTACGCCCAATGCAGTTAAGAAGCCAGTTCCTGGTACCCCTCGGCTAATTTGTGAGAGATGTAGATGTGCTTTAGAAAATACAAGTGAAGAAAAAAACCAAGATCCTGTGCCATTGGACTCTACCAGTCCTGGAAATGGAGTAAACACGAGTAATGTACACTCCGGCTTAAATAAACCTGGTTTGGTGTTAACTGGCGTTAATAAAAGCAAAACAGTTGCAAAAGTCAAGAACTCCAAGTTGAAAGAGCAACTTGAATTTTCGCAAAGCTCTAAAAGTAGTCAAGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATGTAAGTGGCTCAAGTCGTAGCACTAGGCCTCACATGTCAAAAGATGTCAGATGGGAAGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGAGCTTGAGAAACTTCAATCTCTTGAAGAAGCTTGGTTGTGGGGACATTGGGACTGTATATCTTGCGGAACTAATTGGCACAGGCTGCTTGTTTGCTATTAAGGTCATGGACAATGAATTTTTGGAAAGGAGAAAGAAAATGCCTAGGGCTCAAACTGAAAGAGAAATACTAAGGATCCTGGATCATCCTTTTCTTCCCACAATGTATGCACAATTTACATCAGATAATCTATCGTGTCTCATCATGGAGTATTGTCCAGGAGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGATGTTTTTCAGAGCCAGCAGCAAGGTTCTATGTTGCCGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCGGAAAACATTCTTGTTCGGGAAGATGGTCACATTATGCTCACAGATTTTGATCTGTCCCTGAGGTGTGCTGTTAACCCAACACTTCTGAAATCTTCTTCTGATGTCGACCCTGCAAAAATTTCTGGTCTAAGTGTGCAATCAAGTTGCATCGAACCATTCTGCATCGAACCATCTTGTCAAGTTCCATGCTTCAGCCCAAGATTCCTACCTGCGGCTGCAAAAACAAGGAAATTAAAAGCTGATCCTTCTGCCCTGGTCAGATCATTGCCACAGCTGGTGGCCGAGCCCACTGATGCAAGATCAAACTCCTTTGTTGGTACACATGAATACTTGGCTCCCGAGATCATCAAAGAAGAGGGACATGGAGCTGCGGTTGACTGGTGGACATTTGGTGTTTTTCTCTATGAACTTTTGTATGGTAGAACTCCCTTTAAAGGTTCTAACAATGAAGAAACATTGGCCAACGTAGTGATGCAGAGTCTTAGATTCCCTGACCACCCATTTGTTAGTTTCCAAGCAAAGGATCTGATTAGAGGGTTATTGGTTAAGGAGCCTGAAAACCGTTTGGGTTCAGAGAAAGGGGCTGCTGAGATCAAACAACATCCTTTCTTTGAAGGCCTTAACTGGGCCTTAATTCGTTGCGCGGTCCCTCCAGAACTTCCAGACTATTATGATTATGGAGTTTCAGACATGATTAACTCACAGGTTAAGGGTGCTAAGTACTTAGAGTGTAAAGTAGGAGAGCGTGTAGAATTCGAGTTGTTTTAA 2613 0.429 MGSFSGTSEIVEAREELNTRKAPGIYQYNSECSTSEKSYKLSVLKLGCKDDLDDDINKLFESIALKSSSRDLGLLQDGASPRLKSALKKPITMGVPRSPRVGASESVNLKQALRDLCISKASEMAAMKRLSKSTASPRISEVGKIQTLYNSVVAETNRPGPSSVESKERQIEVALVPEKSKSLSMVKTSQSYQAAQIASSSRNIRSSRQVAVATTQYDSGTSLVQNDLACPSSKVGIQSQRVVPVELEEQASASSSSILNTIGSKLEVPKNASSPKKLGNKAFVSNNGKKGRPQTESSSTSANGNRVNKLPRHAPRTVKSVIKNKNLTKKKPKEDSGSALCGPTPNAVKKPVPGTPRLICERCRCALENTSEEKNQDPVPLDSTSPGNGVNTSNVHSGLNKPGLVLTGVNKSKTVAKVKNSKLKEQLEFSQSSKSSQGEYSSSTSTSDESNVSGSSRSTRPHMSKDVRWEAIRHAQMQHGVLSLRNFNLLKKLGCGDIGTVYLAELIGTGCLFAIKVMDNEFLERRKKMPRAQTEREILRILDHPFLPTMYAQFTSDNLSCLIMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLLKSSSDVDPAKISGLSVQSSCIEPFCIEPSCQVPCFSPRFLPAAAKTRKLKADPSALVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVMQSLRFPDHPFVSFQAKDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAVPPELPDYYDYGVSDMINSQVKGAKYLECKVGERVEFELF 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02366 870 MobiDBLite consensus disorder prediction 312 326 - -
Vimu6g02366 870 Gene3D Phosphorylase Kinase; domain 1 485 566 - -
Vimu6g02366 870 FunFam serine/threonine-protein kinase D6PK-like 571 638 - -
Vimu6g02366 870 ProSiteProfiles Protein kinase domain profile. 487 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02366 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vimu6g02366 870 SMART serkin_6 487 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02366 870 SUPERFAMILY Protein kinase-like (PK-like) 460 845 IPR011009 -
Vimu6g02366 870 FunFam serine/threonine-protein kinase D6PK-like 714 837 - -
Vimu6g02366 870 Pfam Protein kinase domain 716 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02366 870 Pfam Protein kinase domain 488 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02366 870 Gene3D Transferase(Phosphotransferase) domain 1 567 635 - -
Vimu6g02366 870 MobiDBLite consensus disorder prediction 423 464 - -
Vimu6g02366 870 MobiDBLite consensus disorder prediction 268 355 - -
Vimu6g02366 870 MobiDBLite consensus disorder prediction 370 405 - -
Vimu6g02366 870 MobiDBLite consensus disorder prediction 372 400 - -
Vimu6g02366 870 CDD STKc_phototropin_like 487 837 - -
Vimu6g02366 870 Gene3D Transferase(Phosphotransferase) domain 1 712 833 - -
Vimu6g02366 870 MobiDBLite consensus disorder prediction 425 460 - -
Vimu6g02366 870 FunFam Serine/threonine-protein kinase D6PK-like 485 570 - -
Vimu6g02366 870 MobiDBLite consensus disorder prediction 287 307 - -
Vimu6g02366 870 PANTHER FLIPPASE KINASE 1-RELATED 213 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02366 Vimu-Chr6 20666870 20670502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02366 1 870 AGC Kinase Gene Family AT3G52890 50.576 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu6g02366 Pkinase 2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02366 - - gmx:100792120 1437.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02366 6 20666870 20670502 Vimu5g01784 5 29606424 29616284 ECH
Vimu6g02366 6 20666870 20670502 Vimu6g02366 6 20666870 20670502 ECH