Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02364 ATGAAGGTCATCGCCGCCTATTTGCTCGCCGTATTGGGAGGCAATGCTGCTCCTTCCGCCGATGACTTGAGGCTCATCCTTGGATCCGTTGGAGCAGACGCAAACGACGACAATATTAGTAACCTCCTGTCCGAAGTCAAGGGCAAAGACATCGCCGAACTTATCGCCGCCGGTAGGGAAAAGTTGGCCTCAGTGCCTTCCGGCGGTGGCGCTGCCGTTGCCGTGACCGCAGCTCACGGAGGTGGCGCTTCTGCTCCGGCAGCAGCTGAATCGAAGAAGGAGGAAAAGGTTGAAGAGAAGGAGGAATCAGATGACGATATGGGCTTCAGTCTTTTTGATTAA 342 0.5497 MKVIAAYLLAVLGGNAAPSADDLRLILGSVGADANDDNISNLLSEVKGKDIAELIAAGREKLASVPSGGGAAVAVTAAHGGGASAPAAAESKKEEKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02364 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vimu6g02364 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vimu6g02364 113 Gene3D - 1 59 IPR038716 -
Vimu6g02364 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vimu6g02364 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vimu6g02364 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Vimu6g02364 113 MobiDBLite consensus disorder prediction 82 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02364 Vimu-Chr6 20654704 20657479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02364 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.027 1.26e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02364 K02943 - gmx:100787024 142.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02364 6 20654704 20657479 Vimu6g02364 6 20654704 20657479 ECH