Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02356 ATGGCCGAAGAACACCCATGCCAAGCTCCCGAGGGTCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGCAGCCCCGCCACCATGAATCTCTGTTCTAAATGCTACAGAGACATCCGACTCAAGGAAGAAGAACAGGCCAAAACCGCAGCAACACCAACACCAACAGCAACCGTCGCCTCCGCCACCGCTGTGGTTTCCTCGCCTGCTGCGCCGGTTGAATCCCTCCCTCAACCGGCGGTCGTGACCGCGCCGGACGCGTGCGCACCGCTTCAAGCGAACCGGTGTGGCGCGTGTCGGAAGCGCGTGGGGTTGACCGGGTTTAAGTGCCGGTGTGGAACCACGTTCTGTGGGACCCACAGGTACCCCGAGAAACACGCCTGTGGCTTCGATTTCAAGGCGGTTGGGAGAGAGGAGATAGCTCGGGCGAATCCGGTGATCAAAGGGGAGAAGCTACGGAGGATTTAA 468 0.6026 MAEEHPCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTAATPTPTATVASATAVVSSPAAPVESLPQPAVVTAPDACAPLQANRCGACRKRVGLTGFKCRCGTTFCGTHRYPEKHACGFDFKAVGREEIARANPVIKGEKLRRI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02356 155 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vimu6g02356 155 FunFam Zinc finger AN1-type containing 6 72 151 - -
Vimu6g02356 155 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Vimu6g02356 155 ProSiteProfiles Zinc finger AN1-type profile. 90 136 IPR000058 GO:0008270
Vimu6g02356 155 SMART AN1_Zf_4 96 133 IPR000058 GO:0008270
Vimu6g02356 155 SUPERFAMILY AN1-like Zinc finger 90 150 IPR035896 -
Vimu6g02356 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 54 - -
Vimu6g02356 155 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 155 - -
Vimu6g02356 155 Pfam AN1-like Zinc finger 96 132 IPR000058 GO:0008270
Vimu6g02356 155 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Vimu6g02356 155 Gene3D - 1 63 - -
Vimu6g02356 155 Gene3D - 70 151 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02356 Vimu-Chr6 20578991 20579497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02356 1 155 C2H2 Transcription Factor Family AT3G52800 47.647 5.32e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02356 - - gmx:100527251 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02356 6 20578991 20579497 Vimu6g02356 6 20578991 20579497 ECH
Vimu6g02356 6 20578991 20579497 Vimu3g01021 3 12890077 12892260 PCT