Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02350 ATGGTGGTTGAAGAGGGTGAGATGAATTCCCAACAAGATGCCAACAAGAACCACCATTCTCAGTTCCCACCATCGTCCATCGGAAGACAGACATCGATATATTCTCTTACACTGGATGAGTTCCAGCACAGTCTATGCGAGACCGGCAAAAACTTCGGTTCCATGAACATGGACGAGTTTATCAGCAGCGTCTGGAACGCAGAAGAGAATCAAGCCATAATAACATCTTCCAATGTCCCTCTCTCCCAACCCTTCACTGACAAAGATCCAACAACGCTAAGGAAACAACCAAGCCTACCTCGCCAACCCTCACTCTCTCTCCCTCCACCTCTATCCAGGAAAACCGTGGATGAAGTTTGGTCCCAGATTCAGAAAGAACAACACGACAGCACTAACAACAACGATGTTCTGAATAATACCGAGTCTGCCCCTCGCCAGCCCACTTTCGGTGAGATGACTTTGGAGGACTTTTTGGTCAAGGCTGGGGTGGTTCGGGAACAACCATCTGCACCACCACAGTTGTCTCATCACTCTCACCACCTCCAACACCAGCAGCAGCCGCAGCCACAGCCGCAGCAGCTGCATTACCCGAGTAACAACGGTGCAATGCCGGGAATGGGTTCTCCTTTTGTTGGTAGGAATGTTATTGGTGCAGTGAGTAACGTGGTTGCACCGGGTTACCAAGTGGGGGAGGCTTCTGGTGGGTATGCTGTAAACGGTAAGAGGGACGGTGGTGCGGTGTTTCATCAGCAAGGTGTTTCCTTTGGAGGAAGTGGGTATGGGATGAGTCCCGCGATGGGAATGGGTGGGCCTGTGAGTCCTGCTAATTCTTCTGATGGAATAGGGAATGATTGTGGGCAGTTTGGGCTTGAGATGGGTGGTTTGAGAGGTAGAAAGAGGATAGGGGATGGTCCTGTGGAAAAGGTGGTAGAGAGGAGGCAAAGGAGAATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGCATACACTGTTGAATTAGAAGCGGAACTAAACCAACTAAAAGAAGAGAACGCCCAACTGAGACAGGCGCTGGCTGAGCTCGAGAGAAGAAGAAAGCAACAGATTTTTGAAGAATTAAGCAATATTAGCGTTCAAGCCAACGCTCAGAAAGTAAAAGAGAAAGATAAACTGAGAGCTTTGAGAAGGTACATGAGTTATCCTTAG 1200 0.4892 MVVEEGEMNSQQDANKNHHSQFPPSSIGRQTSIYSLTLDEFQHSLCETGKNFGSMNMDEFISSVWNAEENQAIITSSNVPLSQPFTDKDPTTLRKQPSLPRQPSLSLPPPLSRKTVDEVWSQIQKEQHDSTNNNDVLNNTESAPRQPTFGEMTLEDFLVKAGVVREQPSAPPQLSHHSHHLQHQQQPQPQPQQLHYPSNNGAMPGMGSPFVGRNVIGAVSNVVAPGYQVGEASGGYAVNGKRDGGAVFHQQGVSFGGSGYGMSPAMGMGGPVSPANSSDGIGNDCGQFGLEMGGLRGRKRIGDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLRQALAELERRRKQQIFEELSNISVQANAQKVKEKDKLRALRRYMSYP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02350 399 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 310 366 - -
Vimu6g02350 399 Coils Coil 328 369 - -
Vimu6g02350 399 Gene3D - 310 362 - -
Vimu6g02350 399 SMART brlzneu 308 372 IPR004827 GO:0003700|GO:0006355
Vimu6g02350 399 MobiDBLite consensus disorder prediction 8 28 - -
Vimu6g02350 399 MobiDBLite consensus disorder prediction 77 149 - -
Vimu6g02350 399 SUPERFAMILY Leucine zipper domain 312 361 IPR046347 GO:0003700|GO:0006355
Vimu6g02350 399 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 315 330 IPR004827 GO:0003700|GO:0006355
Vimu6g02350 399 CDD bZIP_plant_BZIP46 312 366 - -
Vimu6g02350 399 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 310 362 IPR004827 GO:0003700|GO:0006355
Vimu6g02350 399 MobiDBLite consensus disorder prediction 171 199 - -
Vimu6g02350 399 MobiDBLite consensus disorder prediction 125 147 - -
Vimu6g02350 399 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 366 IPR043452 GO:0003700|GO:0045893
Vimu6g02350 399 Pfam bZIP transcription factor 312 364 IPR004827 GO:0003700|GO:0006355
Vimu6g02350 399 MobiDBLite consensus disorder prediction 77 101 - -
Vimu6g02350 399 MobiDBLite consensus disorder prediction 1 28 - -
Vimu6g02350 399 MobiDBLite consensus disorder prediction 168 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02350 Vimu-Chr6 20514249 20520417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02350 23 367 bZIP Transcription Factor Family AT2G36270 50.374 7.90e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu6g02350 bZIP_1 6.7e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02350 K14432 - gmx:100818567 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02350 6 20514249 20520417 Vimu6g02350 6 20514249 20520417 ECH