Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02335 ATGCAAAAAATGCCTGGGACAGGACATAGAGATTTATTACCGGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGACGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGAAGTTGAGTATGAAGAGGTAGAGGAGGAGGAAGAAGTAGAAGTGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGAGGAGGAGGAGGAAGAAGAAGAAGTAGAAGAGACTAAGCCTTCAGATGTTAAAGATGAGACAGGAGTGACAGACACTGAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCCGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGCGTATTTTGTCAATCTGTGGGAGAAGTTTCAACGGTTAGGATAATGAAGGGCAAAGAATCAGGTGAAGCAAAAGGATACGCTTTTGTGACCTTCATGACAAAGGAATTGGCATCTAAGGCTATTAAGGAGCTGAATAACAATGAACTTAAGGGAAAAAAAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATTGGTAATGTTCCCAGATTTTGGACTGAAGAAAATATGAACGAAGTTGTGTCAGAGATTGGCCCTGGAGTCATTTCTGTGGAACTATTGAAGGACCCACAGATTTCTGGCCGTAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAAACTTTAAACTTGGCAGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATCTGCAAACTCTCAGGTAAAAGCATTGTATGTAAAGAACCTTCCAGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAGAAATCACAAAAGTGGTTGTCCCTTCTGCTAAAGCTGGCCAAGAAAAGAGTAGATATGGTTTTGTTCACTTTGCTGAAAGATCAAGTGCCATGAAGGCATTGAAGAACACAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCAGCTAATCAACAGAAGTCAGCTATACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCAATAGGTGCAGGATATGGTGGTGCAATAGGTGCAGGATATGGTGGTGCAATAGGTGCAGGATATGGTGCTGCTGGCTTTGCGCAACCACTGATGTATGGTCCTGGACCAACCCCTCCTGGCATGACAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTATTGCAACAACCAGGGTTTCAACAGCATGCCCCGATGCCGGAATCCCAACATAGGAGGAGGGGCGGCGGTAGTTCAAGTGGTGGGAAACGCAGTAATGATAATAACAGCAATAGTGGGCGTGGCCGATATCATCCCTACTAA 1521 0.4418 MQKMPGTGHRDLLPEGNSEPEKPTDSDEQVDFDGDNDQEETMEEEEVEYEEVEEEEEVEVEEEEEEEEEEEEEVVEEEEEEEEVEETKPSDVKDETGVTDTEDEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSTVRIMKGKESGEAKGYAFVTFMTKELASKAIKELNNNELKGKKIKCSTSQAKHRLFIGNVPRFWTEENMNEVVSEIGPGVISVELLKDPQISGRNRGFAFIEYYNNACAEYSRQKMSNSNFKLGSNAPTVSWADPRNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGEITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGAANQQKSAILPTYPPHLGYGMVGGAIGAGYGGAIGAGYGGAIGAGYGAAGFAQPLMYGPGPTPPGMTMMPMLLPDGRIGYVLQQPGFQQHAPMPESQHRRRGGGSSSGGKRSNDNNSNSGRGRYHPY 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02335 506 MobiDBLite consensus disorder prediction 466 506 - -
Vimu6g02335 506 MobiDBLite consensus disorder prediction 89 105 - -
Vimu6g02335 506 SUPERFAMILY RNA-binding domain, RBD 116 284 IPR035979 GO:0003676
Vimu6g02335 506 Coils Coil 35 88 - -
Vimu6g02335 506 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 22 498 - -
Vimu6g02335 506 SMART rrm1_1 200 277 IPR000504 GO:0003723
Vimu6g02335 506 SMART rrm1_1 120 193 IPR000504 GO:0003723
Vimu6g02335 506 SMART rrm1_1 294 367 IPR000504 GO:0003723
Vimu6g02335 506 MobiDBLite consensus disorder prediction 30 88 - -
Vimu6g02335 506 Gene3D - 200 280 IPR012677 -
Vimu6g02335 506 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 282 391 - -
Vimu6g02335 506 MobiDBLite consensus disorder prediction 1 105 - -
Vimu6g02335 506 SMART rrm2_1 294 367 IPR003954 GO:0003676
Vimu6g02335 506 SMART rrm2_1 120 193 IPR003954 GO:0003676
Vimu6g02335 506 Gene3D - 281 420 IPR012677 -
Vimu6g02335 506 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 200 280 - -
Vimu6g02335 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Vimu6g02335 506 CDD RRM_SF 121 193 - -
Vimu6g02335 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 364 IPR000504 GO:0003723
Vimu6g02335 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 191 IPR000504 GO:0003723
Vimu6g02335 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 267 IPR000504 GO:0003723
Vimu6g02335 506 SUPERFAMILY RNA-binding domain, RBD 287 377 IPR035979 GO:0003676
Vimu6g02335 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 281 IPR000504 GO:0003723
Vimu6g02335 506 Gene3D - 19 199 IPR012677 -
Vimu6g02335 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Vimu6g02335 506 MobiDBLite consensus disorder prediction 14 29 - -
Vimu6g02335 506 MobiDBLite consensus disorder prediction 479 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02335 Vimu-Chr6 20412146 20416672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02335 121 394 Eukaryotic Initiation Factors Gene Family AT4G34110 23.871 6.12e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02335 K13161 - gmx:100798476 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02335 6 20412146 20416672 Vimu6g02335 6 20412146 20416672 ECH