Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02334 ATGAACGCCTGGATCTTGAGACCCCGTGAAAGCGGTAATCCTGGAAACCGTGTAATGTGCCGGAATTGGTTCTCCCATCACAGCCTCGGAAAAACATCTGCCATTTGCTGGACTGCCTCTGCTTGTCCCCTTAATTCTTCCATTATCCACGTGAACTGTTCCATCCGACATTACGTTTACTTAGCCCTGGAACACTCAAAAGCATGTATATCTCACGTCGCGCTCTTCTTAGTTAAGAGTGTCTCTTTGTTACTCCCAAGTGAGGCAGTTATTGTGCATAACGAATACCAAGGTTATCGTGGGGACTTGGCATCCTTTGCTGCCATAGAGCGAAAGACAGGGGCATGGGAAACTATAAATAAGAGATGGCTAAGCTCAAACTCCAAATCCTGTTCTTTTACACGGTATGAACTAGACCATAGTTTGAAAGCCAATCTCAAGATCAACCTTCCACAATCCAATCTATATGTTAAGGTATCTTGGCAAGCAGTACAACTATCCTCCCGTCCTACCAATCTTCCTATGATCAAAGCCGTTATGCTTGATGAGTTGAGTCAAATTATCTTCTTATGTCTTGAACAGAAAATGGACATGTCAAATCCTGCAGCCTTTGTCAATGCAGAAATACTGCACTTTTATGTTGGAAGGAGAGTAAGGGCCCTGATGCACGTTGTGCGATCTGATGGTGGAGTTGTCATTGGAAAATCAACAGATGAGAAACAGCTAGTAGTAAAAGGATTTCCCCCTGCTCCTCTTACAACTTTTGTAGAAGTTTTTGGTATTGTTAACAGTGATAAGTCAATTGCTGCTGAGATATGGATCAATTTTGGTGATTCTATTGGTATTGTTTTCCTTCCCATTCCTCAGATTGATTTTGAGATATGGCCGAAACATATATGTTCAACTACAACAAGCTTTGTCAGCTTGCAAATGGAGAACTTAAATACCTGTTCCTGTGAGTTATAA 966 0.4182 MNAWILRPRESGNPGNRVMCRNWFSHHSLGKTSAICWTASACPLNSSIIHVNCSIRHYVYLALEHSKACISHVALFLVKSVSLLLPSEAVIVHNEYQGYRGDLASFAAIERKTGAWETINKRWLSSNSKSCSFTRYELDHSLKANLKINLPQSNLYVKVSWQAVQLSSRPTNLPMIKAVMLDELSQIIFLCLEQKMDMSNPAAFVNAEILHFYVGRRVRALMHVVRSDGGVVIGKSTDEKQLVVKGFPPAPLTTFVEVFGIVNSDKSIAAEIWINFGDSIGIVFLPIPQIDFEIWPKHICSTTTSFVSLQMENLNTCSCEL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02334 321 Gene3D - 196 293 IPR012340 -
Vimu6g02334 321 Pfam Replication factor A protein 3 198 280 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu6g02334 321 SUPERFAMILY Nucleic acid-binding proteins 198 278 IPR012340 -
Vimu6g02334 321 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 193 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02334 Vimu-Chr6 20405700 20408342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02334 196 282 Core DNA Replication Machinery Family AT4G18590 58.621 1.24e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02334 K10740 - gmx:100306641 144.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02334 6 20405700 20408342 Vimu6g02334 6 20405700 20408342 ECH
Vimu6g02334 6 20405700 20408342 Vimu3g01644 3 30519681 30530281 PCT