Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02322 ATGGACGTTATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTTATTTCCTTCTATCTTCATAATAAACTCGAAGGAGAAAGAGAAGACATGAATCGAGTTATTCCAGTGGTTGATATTTACGACTACAACCCCTCCCAACTCCCACAAATCTCTGGAGAGGCGAGTCTGAGAGACACGGAACAATGGTTCTTTTTCATTCCGAGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAAGCGTCTCACGACCACAGGGTACTGGAAAGCAACAGGGTCTCCGAATCATGTTTATTCTTCGGATAATCGAATCATAGGTATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCAAATGGAGCCAAAACCGATTGGAAGATGAACGAGTATACCGCCATCAAAGGTGAACCATCACAGTTGCAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCCAAGTGTTTGCGTGCATTTGATAGAAGACCACCACCTAGGAGGAACACAATGAGGCATTCGATTGCTGAAAATGGTGAAGAGCAAGAAAAGGGTTATGATTATCATCAGCATCAAATGTTGGAGAGAAGTGCAACATGTTCACCGGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCAACCCACTCTGCACGGTGAGGGAGGAACCCAAATGGATGTCGACAACGACCCTTTTTTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCTGAATCTTGA 753 0.4462 MDVMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAIKGEPSQLQLRKEFSLCRVYKKSKCLRAFDRRPPPRRNTMRHSIAENGEEQEKGYDYHQHQMLERSATCSPESSSSGDLDHDQPTLHGEGGTQMDVDNDPFLDWEKVDLFLGSES 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02322 250 MobiDBLite consensus disorder prediction 199 216 - -
Vimu6g02322 250 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Vimu6g02322 250 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 199 - -
Vimu6g02322 250 MobiDBLite consensus disorder prediction 163 187 - -
Vimu6g02322 250 Gene3D NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Vimu6g02322 250 MobiDBLite consensus disorder prediction 199 234 - -
Vimu6g02322 250 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vimu6g02322 250 ProSiteProfiles NAC domain profile. 4 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02322 Vimu-Chr6 20314899 20315958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02322 7 243 NAC Transcription Factor Family AT3G44350 45.267 3.94e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu6g02322 NAM 5.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02322 - - pvu:PHAVU_001G192000g 456.832