Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02318 ATGTGGGCAAGCGCAGAAGGTGGTGCTCCAGAGGTTACTCTTGAAACTTCTATGGGGTCCTTCACAGTGGAGCTGTACTACAAGCATGCGCCCAGAACTTGCAGGAACTTCATTGAACTGTCTCGCAGAGGTTACTACGACAACGTTAAATTCCACAGGATCATTAAGGACTTCATAGTACAAGGTGGTGATCCTACTGGAACTGGAAGAGGAGGAGAATCCATATACGGTGCAAAGTTTGAAGATGAGATAAAACGAGAGTTGAAACACACTGGAGCTGGTATCTTATCCATGGCAAATGCTGGCCCAAATACCAATGGTAGTCAGTTCTTTATTACTCTGGCACCTTGCCCGTCTCTCGATGGAAAACACACAATATTCGGAAGAGTGTGTAGGGGAATGGAAATTATCAAACGACTTGGTAGCGTCCAAACAGATAACAACGATAGGCCCATCCATGACGTGAAGATACTGCGTACCTCAGTGAAGGATTAG 495 0.4566 MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKRELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRTSVKD 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02318 164 Gene3D - 2 164 IPR029000 -
Vimu6g02318 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755|GO:0006457
Vimu6g02318 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Vimu6g02318 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755
Vimu6g02318 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 162 IPR044666 -
Vimu6g02318 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413|GO:0003755
Vimu6g02318 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413|GO:0003755
Vimu6g02318 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Vimu6g02318 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Vimu6g02318 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Vimu6g02318 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 161 IPR002130 GO:0000413|GO:0003755
Vimu6g02318 164 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Vimu6g02318 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02318 Vimu-Chr6 20264849 20268433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02318 12 162 U-box Gene Family AT5G67530 49.669 2.66e-50 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02318 K12733 - gmx:100786302 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02318 6 20264849 20268433 Vimu6g02318 6 20264849 20268433 ECH