Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02315 ATGTGTGTTGAGCCCGTTTACTCTGTGAATGTGCCATGCATCACAAACTCTTCGTTTCCCTTATTCCCTGACTGCAACATCGAATTGAATTCCATGGCGGCTGTGAGAAAAATAATTCAGGCCAATAAAAATTTAAATTTGTCGCCATCTCTTTTTTCTTTTCGCCGAGGAATTGCCTACAAGCTTTTTGTTGGAGGACTGTCCTTCTGCACCACAGAGAAAGCACTGTCAGAGGCATTTTCCAACTACGGGCAAGTTCTTGAAGCCAAAGTTGTAACAGATAGGGTGTCAGACAGATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCAGCAGACGAGGCTGAAAATGCCATAGCAGAGATGAAAGGAAAGACATTAAATGGACGTGTTATTTTTGTTGATTATGCAAAACCCAATACCAACAGTAATGGTGCGATGCCAATTGCTAGAGGACCTCCTAAACCAACACCAGAAACTTGA 480 0.425 MCVEPVYSVNVPCITNSSFPLFPDCNIELNSMAAVRKIIQANKNLNLSPSLFSFRRGIAYKLFVGGLSFCTTEKALSEAFSNYGQVLEAKVVTDRVSDRSKGFGFVTFASADEAENAIAEMKGKTLNGRVIFVDYAKPNTNSNGAMPIARGPPKPTPET 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02315 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Vimu6g02315 159 Gene3D - 42 144 IPR012677 -
Vimu6g02315 159 SMART rrm1_1 61 134 IPR000504 GO:0003723
Vimu6g02315 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Vimu6g02315 159 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 57 147 - -
Vimu6g02315 159 SUPERFAMILY RNA-binding domain, RBD 60 151 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02315 Vimu-Chr6 20251459 20252560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02315 62 137 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.47e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02315 - - var:108327579 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02315 6 20251459 20252560 Vimu6g02315 6 20251459 20252560 ECH