Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g02315 | ATGTGTGTTGAGCCCGTTTACTCTGTGAATGTGCCATGCATCACAAACTCTTCGTTTCCCTTATTCCCTGACTGCAACATCGAATTGAATTCCATGGCGGCTGTGAGAAAAATAATTCAGGCCAATAAAAATTTAAATTTGTCGCCATCTCTTTTTTCTTTTCGCCGAGGAATTGCCTACAAGCTTTTTGTTGGAGGACTGTCCTTCTGCACCACAGAGAAAGCACTGTCAGAGGCATTTTCCAACTACGGGCAAGTTCTTGAAGCCAAAGTTGTAACAGATAGGGTGTCAGACAGATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCAGCAGACGAGGCTGAAAATGCCATAGCAGAGATGAAAGGAAAGACATTAAATGGACGTGTTATTTTTGTTGATTATGCAAAACCCAATACCAACAGTAATGGTGCGATGCCAATTGCTAGAGGACCTCCTAAACCAACACCAGAAACTTGA | 480 | 0.425 | MCVEPVYSVNVPCITNSSFPLFPDCNIELNSMAAVRKIIQANKNLNLSPSLFSFRRGIAYKLFVGGLSFCTTEKALSEAFSNYGQVLEAKVVTDRVSDRSKGFGFVTFASADEAENAIAEMKGKTLNGRVIFVDYAKPNTNSNGAMPIARGPPKPTPET | 159 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g02315 | 159 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 62 | 131 | IPR000504 | GO:0003723 | |
Vimu6g02315 | 159 | Gene3D | - | 42 | 144 | IPR012677 | - | |
Vimu6g02315 | 159 | SMART | rrm1_1 | 61 | 134 | IPR000504 | GO:0003723 | |
Vimu6g02315 | 159 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 138 | IPR000504 | GO:0003723 | |
Vimu6g02315 | 159 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 57 | 147 | - | - | |
Vimu6g02315 | 159 | SUPERFAMILY | RNA-binding domain, RBD | 60 | 151 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g02315 | Vimu-Chr6 | 20251459 | 20252560 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g02315 | 62 | 137 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 38.158 | 2.47e-09 | 53.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g02315 | - | - | var:108327579 | 300.441 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu6g02315 | 6 | 20251459 | 20252560 | Vimu6g02315 | 6 | 20251459 | 20252560 | ECH |