Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02312 ATGTCGATAAACCACTACTCACCAGAAGCCAGACTATACTGGACCGACCAACAACAGGCCGCAACGTGGCTGGGAAACTCTCACACTCCTCGTTTCAACCTGAATGACAACCAGGAGGAGGTGGAGGAGGAGGAAGAGGAGGTGATGGAGAAGGCTGCTGCTTCTGCTGGTGGGGCGGCGCCGCCGGAAGAGGAGGAGAAGGAAGCGATGTTCGAGAAGCCGCTGACGCCGAGCGACGTGGGAAAGCTGAACCGGTTGGTGATCCCGAAACAGCACGCGGAGAAGCACTTCCCGCTGGAGTCGTCGTCATCGTCTTCGTGCGGTGACAGCGCGAAGGGCGTGTTACTGAGTTTCGAGGACGAGTCCGGGAAGTGCTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTGAAGGACAAACGCCTCCACGCTGGCGACGTTGTTTTCTTCCACAGACACCGCACCCATCCTCAACGCTTCTTCATCAACTCCTCCCGCCGCCAAGCCAACCCCCCCGCTCACGTTAACACCACCGCAACACCCTCCTTCTACTCTGCGCACCCTTATCCTGCGCATCAGCTCCCTTTGCCATACCAACCTCACTCCCTTCATGCACCACCAGGTGGAGGGTCCCAAGGACAGAACCAAACGACACCGGGAGGGAACAGTTCAGGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAAGGATTCCCAAAACTCCACGCCACAATCCTCTTACACTCTCTCTTCAACAACAACAACAACACTACTTTCCCACCACCTCTTACACCCTCATACTACCTCCTTTTCTTCTTCTTCTTCTTCTTCCTCCTCCATCCCTCACCATCACCACATGCTACGTCAACAACCGTAA 930 0.5527 MSINHYSPEARLYWTDQQQAATWLGNSHTPRFNLNDNQEEVEEEEEEVMEKAAASAGGAAPPEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLESSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFINSSRRQANPPAHVNTTATPSFYSAHPYPAHQLPLPYQPHSLHAPPGGGSQGQNQTTPGGNSSGGRVLRLFGVNMECQPDKDSQNSTPQSSYTLSSTTTTTLLSHHLLHPHTTSFSSSSSSSSSIPHHHHMLRQQP 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02312 309 MobiDBLite consensus disorder prediction 173 270 - -
Vimu6g02312 309 ProSiteProfiles B3 DNA-binding domain profile. 71 180 IPR003340 GO:0003677
Vimu6g02312 309 MobiDBLite consensus disorder prediction 284 309 - -
Vimu6g02312 309 MobiDBLite consensus disorder prediction 173 196 - -
Vimu6g02312 309 SMART B3_2 71 178 IPR003340 GO:0003677
Vimu6g02312 309 MobiDBLite consensus disorder prediction 26 70 - -
Vimu6g02312 309 Pfam B3 DNA binding domain 71 174 IPR003340 GO:0003677
Vimu6g02312 309 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 262 IPR044800 GO:0003700
Vimu6g02312 309 CDD B3_DNA 70 167 IPR003340 GO:0003677
Vimu6g02312 309 Gene3D - 59 187 IPR015300 -
Vimu6g02312 309 MobiDBLite consensus disorder prediction 220 236 - -
Vimu6g02312 309 SUPERFAMILY DNA-binding pseudobarrel domain 68 175 IPR015300 -
Vimu6g02312 309 MobiDBLite consensus disorder prediction 251 270 - -
Vimu6g02312 309 Coils Coil 31 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02312 Vimu-Chr6 20211158 20212524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02312 64 269 RAV Transcription Factor Family AT5G06250 48.182 3.27e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu6g02312 B3 7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02312 K09287 - gmx:100802734 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02312 6 20211158 20212524 Vimu6g02312 6 20211158 20212524 ECH