Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02301 ATGGGCAAGAAAATGAAGCTTCCTTCCCTCCTCCTCAAGAACTCACACCCCAAACCTTCTTCTACTTCCTGGCCATGGCCCTCTTGCCACCAACCTCGAACCCTCTCTTTTCGAGACCAAAACGATGTCGCTTTCAAAACCATCAACCCAGCCTACTTCGACATGCCCGAGAGCTCCCACTCCTTCTTTACTGTCTCTCCTGACTCTGGAAGCTTCTCAACTGCTTCAGAAGAAGATTCTAGAAGACCGGATTCTCTTGAGACCCTCATTCGCCCCTTGCCTTCCGACCGTTTGTTCTTCCACCCCGACCAGACAAGCTCCATATTAGAGTCCAAAGCAGGAACATCAACACTAACACCAACACAAGCAACACCAACACCAACAACGTTGCCCTTCAAAGACAGTGTGGTTATGTCTGTGGAGTCTCAGGACCCTTACGTGGACTTCCTCAGGTCCATGGAAGAGATGGTGGAAGCCCAGTGCGTTAAGGACTTTGATGGTCTCCAAGAGCTTTTATGTTGGTATTTGAAAGTCAATGGAAAAAGCAACCATGGTTATATTGTTGGTGCTTTCATTGATCTATTGGTGGCTTTTTCTGATATAAACTCTCATTCTCCTTCTTCCCCTTTATCATTCTACAGCTCTTCTCTTTCTTCCTCTTGCAGCACTCACTGTGTTTCATGTTTGGAAGCTGAGGACGAGGTTGATACAGCTACCCCTAATTCTTCTTTCTTGTTAGAACAAGTTAGGGAAGACCAGTCTTCATCTTCTTCATCCTCTTTGAATTAA 789 0.4601 MGKKMKLPSLLLKNSHPKPSSTSWPWPSCHQPRTLSFRDQNDVAFKTINPAYFDMPESSHSFFTVSPDSGSFSTASEEDSRRPDSLETLIRPLPSDRLFFHPDQTSSILESKAGTSTLTPTQATPTPTTLPFKDSVVMSVESQDPYVDFLRSMEEMVEAQCVKDFDGLQELLCWYLKVNGKSNHGYIVGAFIDLLVAFSDINSHSPSSPLSFYSSSLSSSCSTHCVSCLEAEDEVDTATPNSSFLLEQVREDQSSSSSSSLN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02301 262 MobiDBLite consensus disorder prediction 1 29 - -
Vimu6g02301 262 ProSiteProfiles OVATE domain profile. 136 197 IPR006458 -
Vimu6g02301 262 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 61 198 IPR038933 GO:0045892
Vimu6g02301 262 Pfam Transcriptional repressor, ovate 142 197 IPR006458 -
Vimu6g02301 262 MobiDBLite consensus disorder prediction 14 29 - -
Vimu6g02301 262 NCBIfam uncharacterized plant-specific domain TIGR01568 136 198 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02301 Vimu-Chr6 20110597 20111385 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu6g02301 Ovate 5.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02301 - - vun:114179778 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02301 6 20110597 20111385 Vimu3g03602 3 48774292 48775032 ECH
Vimu6g02301 6 20110597 20111385 Vimu6g02301 6 20110597 20111385 ECH
Vimu6g02301 6 20110597 20111385 Vimu3g00155 3 1282196 1282882 PCT