Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02300 ATGTCTGCCTCCAGAAAGAAGCTTCTTCTGAATACAGTGTCCGTGAAACTTGGCTGCGGCACCTGCAGAGGGCCAAAACTCTATCGCATATTCCATCCAAAGCCTAAACCCAAGAACCTCCCCACTTACCAAAACCGCAAAAACCACTACAACCATTTCTCTTCTTCCTCTTCTTCAGCCCAATGGGCTGACAGCACCAGCACCACCCCCACCAACACCAACACCAACACCACATTCTCTCCCTACCTTGATTCCTCCCACTTTTCTGACTCCGACGTCAAGGCTGCAAGAACAGTGGGGGGTTTGGGAAGAGCTGGCAAAGAAGGGGTGGCGGTGGAGAAAGACTCCGATGACCCTTATCTTGACTTCAGACATTCCATGCTGCAAATGATATTGGAGAACGAGATATACTCCAAACAAGATCTCAGAGACCTTCTCAGTTGCTTCCTTCAGCTCAATTCACCGCACCATCATGGCGTTATAGTCAGGGCTTTCACTGAGATCTGGAATGGCGTCTTCTCTGGCAGGTCTAATTCACACATCAACCGTAAGCCACGTCAGTTCTAA 567 0.4938 MSASRKKLLLNTVSVKLGCGTCRGPKLYRIFHPKPKPKNLPTYQNRKNHYNHFSSSSSSAQWADSTSTTPTNTNTNTTFSPYLDSSHFSDSDVKAARTVGGLGRAGKEGVAVEKDSDDPYLDFRHSMLQMILENEIYSKQDLRDLLSCFLQLNSPHHHGVIVRAFTEIWNGVFSGRSNSHINRKPRQF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02300 188 MobiDBLite consensus disorder prediction 41 78 - -
Vimu6g02300 188 MobiDBLite consensus disorder prediction 33 78 - -
Vimu6g02300 188 NCBIfam uncharacterized plant-specific domain TIGR01568 110 170 IPR006458 -
Vimu6g02300 188 ProSiteProfiles OVATE domain profile. 112 171 IPR006458 -
Vimu6g02300 188 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 46 174 IPR038933 GO:0045892
Vimu6g02300 188 Pfam Transcriptional repressor, ovate 116 172 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02300 Vimu-Chr6 20093882 20094448 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu6g02300 Ovate 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02300 - - gmx:106797222 281.952