LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g02290	ATGTCGCAGTTGAACGGAGCCTACTACGGCCCCGCTATTCCGCCGCAGAAGTCCTACAACCGCCCAGGGCGCGGCAGCGGCGTTGGTTGCTGCTGTGGCTGCCTCTTCAGCTGCCTCTTCAGCCTCATCTTCAAGGTGATACTCACGGTCATCATCATCGTGGCCATCGCCGTGTTCATCTTCTGGCTCATAGTCCGTCCAAACATGGTGAAATTCCACGTCACTGACGCCACCCTCACGGAGTTCAACTATACTAACAACACCCTCCGCTACGATCTTGCCCTGAACATCACAGTGCGCAACCCTAACAAGAGGCTGGGCATCTACTACGACTTCATCGAGGCGAACGCATTGTTCCACGACGCCAGGTTCAACACTCAGTACCCCGATCCCTTCTACCAGGGGCACAAGACCACGCACGTGCTGAACCCCGTCTTCAAGGGGGAGAAAGTGTTGGCTTTGGACGCTGACCAGAGCTCCGAATTGAAGAAGGAGAACTCCACCGGGTTGTATGAGATCGATGTGAAGATGTACCTGAGGGTGAGGTTCAAGTTGGGCGCTTTCAAGACCAAGACACTCAAGCCCAAAGTCACCTGCGACTTGCGCGTGCCTTTCAAGGGAACCGCCACCGCCTTTGAAACCACCAAGTGCGACTGGGATCGCTGA	666	0.5571	MSQLNGAYYGPAIPPQKSYNRPGRGSGVGCCCGCLFSCLFSLIFKVILTVIIIVAIAVFIFWLIVRPNMVKFHVTDATLTEFNYTNNTLRYDLALNITVRNPNKRLGIYYDFIEANALFHDARFNTQYPDPFYQGHKTTHVLNPVFKGEKVLALDADQSSELKKENSTGLYEIDVKMYLRVRFKLGAFKTKTLKPKVTCDLRVPFKGTATAFETTKCDWDR	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g02290	221	PANTHER	OS05G0367900 PROTEIN	30	205	IPR044839	GO:0098542
	Vimu6g02290	221	Pfam	Late embryogenesis abundant protein	96	199	IPR004864	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g02290	Vimu-Chr6	20024273	20024938	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g02290	64	205	SNARE and Associated Proteins	AT1G32270	37.500	7.32e-26	100

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g02290	-		-	gmx:100793187	327.791