Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02289 ATGGCCGATAAGCAACCCCATTTGAATGGTGCTTATTACGGTCCCGCCATTCCCACAGCGGAACCACCACGCCACCGCCCTCATCGCGAAAGAGGCTGCTGTTGCTGCCTCTTCGGAATCTTGTGGAAGATTCTGGTTGTACTCATCGTTCTCGTTGGCCTAGCAATCCTCATATTCTGGCTGGTTGTTCAACCCCGCTCCTTCAAGTTCCATGTCACGGAAGCCGACCTAACCCAATTCGACTACAACGCCAACAACAGCACCCTCGACTACAACCTGGTCCTGAACTTCACCGCACGCAACCCCAACAAAAAACTGAGCATCTACTACGACAAAGTGGAAGCGTTGGCATTCTACGAGGATACCAGATTCTCCAATGACGATGTGATAACACACATGAACTCGTTCAGGCAGTACACGAAGAGCAGCAGCCCCATGAGCGCTGTTTTCTCAGGCCAGCAGGTGGTGACACTAGACAATGAACAAGTGTCTCAGTTGAATGAACACAAGAATGAAGGCGTTTACGAATTCTATGTGAGGCTCAACTTCAGGATTCGATACAGACTTGGGGATGTTATCTCTGGTGACTTCAAACCCAAGGCCAAATGTCATATCAAGGTTCCCTTCGCTAACAATGCCTCTCAAACTTTTCAGACCACCAAGTGCGACATCGATTACTAG 681 0.4934 MADKQPHLNGAYYGPAIPTAEPPRHRPHRERGCCCCLFGILWKILVVLIVLVGLAILIFWLVVQPRSFKFHVTEADLTQFDYNANNSTLDYNLVLNFTARNPNKKLSIYYDKVEALAFYEDTRFSNDDVITHMNSFRQYTKSSSPMSAVFSGQQVVTLDNEQVSQLNEHKNEGVYEFYVRLNFRIRYRLGDVISGDFKPKAKCHIKVPFANNASQTFQTTKCDIDY 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02289 226 Pfam Late embryogenesis abundant protein 97 198 IPR004864 -
Vimu6g02289 226 PANTHER OS05G0367900 PROTEIN 31 209 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02289 Vimu-Chr6 20020697 20021377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02289 62 216 SNARE and Associated Proteins AT1G32270 30.968 2.38e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02289 - - gmx:100807701 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02289 6 20020697 20021377 Vimu3g00168 3 1450151 1450864 PCT