Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02288 ATGGCCGATAAGCAACCCCATTTGAATGGTGCTTATTACGGTCCCGCCATTCCCACAGCGGAACCACCACGATACCGCCCTCATCGCGAAAGGGGCTGTTGTTGCTGCCTCTTCGGAATCTTGTGGAAGATTCTGGTTGTACTCATCGTTCTCGTTGGCCTAGCAATCCTCATATTCTGGCTGGTTGTTCAACCCCGCTCCTTCAAGTTCCATGTCACGGAAGCCGACCTAACCCAATTCGACTACAATGCCAACAACAGCACCCTCGACTACAACCTGGTCCTGAACTTCACCGCACGCAACCCCAACAAAAAACTGAGCATCTACTACGACAAAGTGGAAGCGTTGGCATTCTACGAGGATACCAGATTCTCCAATGACGATGTGATAACACACATGAACTCGTTCAGGCAGTACACGAAGAGCAGCAGCCCCATGAGCGCTGTTTTCTCAGGCCAGCAGGTGGTGACACTAGACAATGAACAAGTGTCTCAGTTGAATGAACACAAGAATGAAGGCGTTTACGAATTCTATGTGAGGCTCAACTTCAGGATTCGATACAGACTTGGGGATGTTATCTCTGGTGACTTCAAACCCAAGGCCAAATGTCATATCAAGGTTCCCTTCGCTAACAATGCCTCTCAAACTTTTCAGACCACCAAGTGCGACATCGATTACTAG 681 0.489 MADKQPHLNGAYYGPAIPTAEPPRYRPHRERGCCCCLFGILWKILVVLIVLVGLAILIFWLVVQPRSFKFHVTEADLTQFDYNANNSTLDYNLVLNFTARNPNKKLSIYYDKVEALAFYEDTRFSNDDVITHMNSFRQYTKSSSPMSAVFSGQQVVTLDNEQVSQLNEHKNEGVYEFYVRLNFRIRYRLGDVISGDFKPKAKCHIKVPFANNASQTFQTTKCDIDY 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02288 226 Pfam Late embryogenesis abundant protein 97 198 IPR004864 -
Vimu6g02288 226 PANTHER OS05G0367900 PROTEIN 31 209 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02288 Vimu-Chr6 20012494 20013174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02288 62 216 SNARE and Associated Proteins AT1G32270 30.968 2.58e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02288 - - gmx:100807701 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02288 6 20012494 20013174 Vimu3g00170 3 1477920 1478603 PCT