Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02259 ATGCTCCACTCTTCGCTAACTCTCCTCTTCATCCTCCTCTTTTCCCTCGCCACTGCCGACCCGCACGACGCCGAAATACTGCGCCAATTCCGAAAAGGGTTGGACAACCCGGAACTGTTACCATGGCCGGACAGCGGCGATGACCCGTGTGGTTGGAAGTACATTTTCTGCGACAATAAGAACCGCGTGAACCAGATTCAGGCTAAGGGGTTGAACCTGAGCGGTCCTCTTCCGCAGAACCTGAACCAGCTCACGAATCTCTTCAACGTGGGCCTCCAGAACAACAGGCTCAACGGCCCATTGCCCTCCTTCCGCGGCCTGTCAAATCTCAAATACTTGTATCTTGACTACAACGACTTCGACTCCATTCCTTCAGATTGTTTCGATGGGCTCCAGAGTTTGGAAGTGCTCGCCTTGGATAATAATAAACTTAACGCCAGCTCCGGCGGCTGGCACTTACCGCAAACGCTCCAGGGTTCAACGCAGTTGACCAATCTCTCCTGTATGGGCTGCAACCTCGCCGGCCCATTGCCCGTGTTTCTCGGAACAATGAACTCGCTGTCGTTTTTGAAGCTCTCCAACAACAACTTGACGGGAGAGATTCCCCTGAGTCTAAACGACTCTGCGTTGCAGGTTCTCTGGCTGAATAACCAGCAGGGGGAGCTTCTTACTGGAAGAATTGACGTTGTGGCCTCCATGGTTTCGCTCACGAGTTTGTGGCTTCACGGGAACGCATTCACTGGAACGATTCCCGATAACATTGGGGGTTTGACCTCCCTACGGGATCTTAACCTTAATGGGAACAACCTCGTTGGGTTGGTTCCTCAAGGTTTGGGTGACCTGAAGCTGGACAAACTGGACTTGAACAACAACCATTTTATGGGTCCGATTCCCAATTTTAAAGCGGCTCAAGTGTCTTATACTAATAACGATTTTTGTGTGAACAAGTCAGGGGTTCCTTGCGCGTTTGAGGTGATGGCGCTGTTGGGGTTCCTTGGGGGGTTGAATTATCCTGAGAATTTGGTTGACTCGTGGAGTGGGAATGATCCTTGTGGGAGTCAGTGGTTGGGGATAAAGTGTAATGTTGATGGAAAGGTGAATATGATTAATTTGCCTAATATGAATCTTAGTGGGAGTTTAAGTCCTTCTGTTGCGAACTTGGGTTCTCTTGCTGAGATTAGGTTGGGGGGGAATGATATTAGTGGTGCGGTGCCTGGTAATTGGAGTAGTTTGTCATCTTTGACATTGTTGGATCTGAGTGGCAATAACATTTCTCCTCCATTGCCTTTGTTTAAGACTGGATTGAAACCTATTGTTACTGGGAATCCTCTCCTCAATGGTGGTGCGGAAAATCCTTCATCAGGGAGCAAGAGCCCATCATCTGGATCTGGTAATGTCGACCCTGCATCGGGTCAGTCCAATTCTAGTTCGAGTGATTCTCGTGAAACTAAGAAATCTAAACGGAAAGGGTTGGTTTCCATCGTTGCTCCGATTGCGGGAGTGGCAGCTGCGGCTTTTCTGCTCATTCCACTCTATGCATATTGTTTCAAGAGGACGAAGGGTGGCTTCCAGGCACCAACCTCACTGGTAATTCACCCTAGGGATCCATCGGATTCAGACAGTGTTGTGAAGATTGCTGTTGCTAACAATACAAATGGAAGCATTTCCAATTTGACAGGGAGTGGTTCTGGGAGTAGGAATAGTAGTGGAATTGGGGAGTCTCATGTCATTGACGCTGGAAATCTTAGAATATCAGTCCAAGTTCTCAGGAACAGGAGGCTCAATATTGCATTGGATGTTGCCAGAGGGATGGAGTATCTTCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGCCGTCAAATATCTTGCTTGCTGATGATTTCAGAGCAAAGGTCTCAGATTTTGGTTTGGTAAAACTTGCTCCTGAAGGTGAAAAATCTGTAGTTACCAGGCTTGCCGGGACTTTCGGATATTTGGCGCCAGAATATGCAGTGACTGGAAAAATCACTACAAAAGCGGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGCTATTGACTGGATTAATGGCACTTGACGAGGACAGACCTGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGCATATCAAATCAGATAAGAAGAAGCTAATGGCTGCTATTGACAAAGCCCTTGATGTTAAGGAAGAAACATTTGAGAGCATCTCCATCATTGCTGAATTAGCAGGGCACTGCACTGCCAGAGAACCGAGTCAACGGCCAGAGATGGGTCATGCCGTAAATGTGCTGGCACCGCTTGTTGAAAAATGGAAACCCTTTGATGATGACACTGAGGAGTATTCTGGGATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGATGGCAAGAGGCAGAAGGAAAGGACATGAGTTATATGGACCTAGAAGACAGTAAGAGCAGTATCCCCGCAAGGCCTACCGGATTTGCAGATTCTTTTACATCAGCTGATGGCCGTTAA 2511 0.4775 MLHSSLTLLFILLFSLATADPHDAEILRQFRKGLDNPELLPWPDSGDDPCGWKYIFCDNKNRVNQIQAKGLNLSGPLPQNLNQLTNLFNVGLQNNRLNGPLPSFRGLSNLKYLYLDYNDFDSIPSDCFDGLQSLEVLALDNNKLNASSGGWHLPQTLQGSTQLTNLSCMGCNLAGPLPVFLGTMNSLSFLKLSNNNLTGEIPLSLNDSALQVLWLNNQQGELLTGRIDVVASMVSLTSLWLHGNAFTGTIPDNIGGLTSLRDLNLNGNNLVGLVPQGLGDLKLDKLDLNNNHFMGPIPNFKAAQVSYTNNDFCVNKSGVPCAFEVMALLGFLGGLNYPENLVDSWSGNDPCGSQWLGIKCNVDGKVNMINLPNMNLSGSLSPSVANLGSLAEIRLGGNDISGAVPGNWSSLSSLTLLDLSGNNISPPLPLFKTGLKPIVTGNPLLNGGAENPSSGSKSPSSGSGNVDPASGQSNSSSSDSRETKKSKRKGLVSIVAPIAGVAAAAFLLIPLYAYCFKRTKGGFQAPTSLVIHPRDPSDSDSVVKIAVANNTNGSISNLTGSGSGSRNSSGIGESHVIDAGNLRISVQVLRNRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFRAKVSDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDKALDVKEETFESISIIAELAGHCTAREPSQRPEMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDMSYMDLEDSKSSIPARPTGFADSFTSADGR 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02259 836 MobiDBLite consensus disorder prediction 442 487 - -
Vimu6g02259 836 SUPERFAMILY Protein kinase-like (PK-like) 592 766 IPR011009 -
Vimu6g02259 836 ProSiteProfiles Leucine-rich repeat profile. 109 130 IPR001611 GO:0005515
Vimu6g02259 836 FunFam Leucine-rich repeat receptor-like kinase 323 448 - -
Vimu6g02259 836 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Vimu6g02259 836 Pfam Leucine rich repeat 87 144 IPR001611 GO:0005515
Vimu6g02259 836 ProSiteProfiles Protein kinase domain profile. 455 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02259 836 FunFam Receptor-like kinase TMK4 21 318 - -
Vimu6g02259 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Vimu6g02259 836 Pfam Leucine rich repeat N-terminal domain 325 361 IPR013210 -
Vimu6g02259 836 Pfam Leucine rich repeat N-terminal domain 21 58 IPR013210 -
Vimu6g02259 836 Gene3D Ribonuclease Inhibitor 20 320 IPR032675 -
Vimu6g02259 836 Pfam Protein kinase domain 595 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02259 836 Gene3D Transferase(Phosphotransferase) domain 1 581 786 - -
Vimu6g02259 836 MobiDBLite consensus disorder prediction 446 479 - -
Vimu6g02259 836 Gene3D Ribonuclease Inhibitor 323 445 IPR032675 -
Vimu6g02259 836 SMART LRR_typ_2 107 130 IPR003591 -
Vimu6g02259 836 SMART LRR_typ_2 233 256 IPR003591 -
Vimu6g02259 836 SMART LRR_typ_2 184 208 IPR003591 -
Vimu6g02259 836 SMART LRR_typ_2 411 433 IPR003591 -
Vimu6g02259 836 SMART LRR_typ_2 131 159 IPR003591 -
Vimu6g02259 836 SMART LRR_typ_2 257 280 IPR003591 -
Vimu6g02259 836 SUPERFAMILY L domain-like 20 301 - -
Vimu6g02259 836 MobiDBLite consensus disorder prediction 810 836 - -
Vimu6g02259 836 FunFam PTI1-like tyrosine-protein kinase 3 570 780 - -
Vimu6g02259 836 PANTHER OSJNBA0070M12.3 PROTEIN 6 591 - -
Vimu6g02259 836 SMART serkin_6 514 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02259 836 SUPERFAMILY L domain-like 324 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02259 Vimu-Chr6 19784729 19787796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02259 63 766 Receptor kinase-like Gene Family AT5G65710 25.564 1.97e-44 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu6g02259 Pkinase 1.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02259 K00924 - gmx:100305366 895.96