Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02255 ATGAACGACAAGCGAAACACGATCTCAAATATTGTCATTCAGGATACCTTTGAGAGAGAAAGTACCAAAAAAGCTGCAATTATTGGGAGTTGTGTTGATGGGTTGATCCACAAATCTAACAACCTGTTATACCAAAAACCGATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCAGGTGCCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCAGGCTACATCCACTACTCCGACGCACCGTCGCAGCCCCCGCCCTCACACGCTGCGGGAAATCTCGTCTTTCTCAACCCTGCCGCGGTTGCCGGCGCCAACAGCAACGGCTCCTTCAACCCTCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGAATCCCCCTCCCCGCTTCCCAGGACCTCAACCACCACTCCATGCACGGGCACCACGATGTCTCGGCACTGCATGGCTTCCTCCCGCGCATGCAGTACAATCACTGGAACACATTAGACCCGGCTTCGGCGGCGCGTGATACTCCACGCGCGCAGCAGGGCTTGTCTCTGGGTCTGGGGTCGTTCCGGGAGGGTCAGGCTCCGGGCATGTCCGGCGACGACTTGCGCGTGTCAGGGGGTTCACCGTCGTCAGCGTCTGGGGTTACCAATAATGGAGCTTCGGGCATTCAGAGCGTTCTCCTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTGGAAGAGGTTGTGAATGTTAACAATGGGATTGGCACCGAGTTGGGTAAAAAGAGTGGGGGACAGACGAAGGTGATTGGAGAATCATCCGCAGCAGGTAGTGGAGACGGTTCAGTTGGTGGGGAAGGGAACGGAAAACGTAGCTCTGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGGCAAACTGATTGCCATGCTTGATGAGAAAGATTATGAAGGGCTGGTAGTGGGGAATTGCATGGTTGTGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATTGTGGTGTCATCATTTGAGCAAGCTGCGGGGATTGGGTCTGCGAGAACATACACGGCTCTTGCATTGCAAACAATCTCTAAGCAGTTTCGGTGTTTGAAAGATGCTATTGCAGGGCAGGTTCGAGCTGCTAACAAGAGTTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTCAAATATGTGGACCATCATCTGAGGCAACAACGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGGGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCCTGGCTCTTCGAACACTTCCTCCACCCATTTGAAAGTTGTGCTGAAATAACTGAGTTTGGTTCCAGTTATCCCAAGGACTCGGACAAACACATGTTGGCAAAGCAAACAGGGCTAACAAGGAGCCAGGTCTCAAATTGGTTTATAAATGCTCGGGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAGATGAAGGATCATGAACAGAATGGATCTGAGGATAAATCAAGCAAGAGCAACGAAGATTCTTCAACGAAAATGGCAGCTCCACCAGAGAAAGGTCCTTCCAATGAAACCGAGGCTAAAAGTTTCAATTCCAAACAAGAAGTTTCAAAGAACCAGAACAGTGCTATGGTTTCAGTTTCTAGACCATCAACGTCACCACTTGGTGGGAGTGTGAGAAACCAATCAGGATTCAGCTTCATGGGGTCTTCAGAGTTGGAAGGGATCACACAAGGAAGTCCGAAGAAAGCAAGGAATCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAACATTGATGTGAAGCCCAATGAGGCAAACAATGAGCAACTCTCAATGAAATTTGGTGACGAAAGGCAAGGCAGAAACGAATCCTCATTCATGGGAAACCAAACAAACTTCATCGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAGTTTGCTCCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGATTCATTACCCGGAACCCATCAAACATTCCTCCCAAACCAAAACATTCAACTGGGTAGAAGCTTAGACATTGGTGAACCAAATGAGTTTGGTAGCATAAACAATTCCTCTCCTCACTCTTCAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTGA 2262 0.4885 MNDKRNTISNIVIQDTFERESTKKAAIIGSCVDGLIHKSNNLLYQKPMATYFHHGNSEIQSGAADGLQTLVLMNPGYIHYSDAPSQPPPSHAAGNLVFLNPAAVAGANSNGSFNPHAPPSHTQQFVGIPLPASQDLNHHSMHGHHDVSALHGFLPRMQYNHWNTLDPASAARDTPRAQQGLSLGLGSFREGQAPGMSGDDLRVSGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGIGTELGKKSGGQTKVIGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKGKLIAMLDEKDYEGLVVGNCMVVVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPFESCAEITEFGSSYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQNGSEDKSSKSNEDSSTKMAAPPEKGPSNETEAKSFNSKQEVSKNQNSAMVSVSRPSTSPLGGSVRNQSGFSFMGSSELEGITQGSPKKARNHEMMHSPNSVPSMNIDVKPNEANNEQLSMKFGDERQGRNESSFMGNQTNFIGGFGQYPIGDIGRFDAEQFAPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGSINNSSPHSSAAYESISMQNPKRFAAQLLPDFVT 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02255 753 MobiDBLite consensus disorder prediction 508 618 - -
Vimu6g02255 753 Pfam Associated with HOX 225 375 IPR006563 -
Vimu6g02255 753 ProSiteProfiles 'Homeobox' domain profile. 461 497 IPR001356 GO:0003677
Vimu6g02255 753 MobiDBLite consensus disorder prediction 508 524 - -
Vimu6g02255 753 SUPERFAMILY Homeodomain-like 461 504 IPR009057 -
Vimu6g02255 753 CDD homeodomain 424 498 IPR001356 GO:0003677
Vimu6g02255 753 MobiDBLite consensus disorder prediction 186 217 - -
Vimu6g02255 753 SMART HOX_1 424 501 IPR001356 GO:0003677
Vimu6g02255 753 Gene3D - 427 502 - -
Vimu6g02255 753 SMART prehox3 220 376 IPR006563 -
Vimu6g02255 753 Pfam Homeobox KN domain 461 493 IPR008422 GO:0003677|GO:0006355
Vimu6g02255 753 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 135 524 - -
Vimu6g02255 753 MobiDBLite consensus disorder prediction 203 217 - -
Vimu6g02255 753 MobiDBLite consensus disorder prediction 541 594 - -
Vimu6g02255 753 MobiDBLite consensus disorder prediction 254 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02255 Vimu-Chr6 19695050 19698242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02255 48 752 Homeobox Transcription Factor Family AT2G35940 48.244 2.46e-169 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu6g02255 POX 8.6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02255 - - gmx:100810901 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02255 6 19695050 19698242 Vimu6g02255 6 19695050 19698242 ECH
Vimu6g02255 6 19695050 19698242 Vimu3g00189 3 1603417 1605784 PCT