Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02252 ATGGAGAGAGGGTGGAAGGCTAACGGTGTTGAGATTTCACCAAATTGTCCCAGGTGTGGTTCTTCCAACACCAAGTTCTGCTATTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTACCAATTGGTGGTGGCTGCCGGAAAAGCAGAAGGGGTAAATATAATAAGGCCCTAAGACAAGCCCATGGCCCAGTTGGGCATTCTGATGATTTAAGGCCTTCATCTTCAGTGGTGTTTGATGGGCCAAATATTGATCTTGCGCAAGTCTATGCAAGTTTTCTCAATGTGAAGCCAGATCAAGTGCAAACAGTTTGTTCTCCTTCTCCTGAGTATTCCAGCATAGTTAACACTGATTTTGGAAACAGTGCTTTGTCTGAAGAGCACCATGGTCTTACTGGGCGTTTGCATTTTCATGAACAGCCCAGAGAATCCCATTTTGGTGAGGATATCGAAATGTACTTTTGCGGGTTGAACTCTATCCAGAAGCATCAGGAGTATACAACAGTTACAAAAACAAATTTTGAGTTGCCTCCATTACCAGGTGAAGTTGCAGAAACCTCACATGGTAATGTTTTGTGGTCCAATTCTGAGATGATGGTAGATCATGCTTTGCAAGCCACCCAATGGCCCCTTCTTGGACCAGAAGCTTATGATGCAGACTTCTTAATGGGTAACTGTTGGAGCCACTTCGATTTGCCAAGGGATGCTTCTTTTTCCACGCCTTGA 777 0.4492 MERGWKANGVEISPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGKYNKALRQAHGPVGHSDDLRPSSSVVFDGPNIDLAQVYASFLNVKPDQVQTVCSPSPEYSSIVNTDFGNSALSEEHHGLTGRLHFHEQPRESHFGEDIEMYFCGLNSIQKHQEYTTVTKTNFELPPLPGEVAETSHGNVLWSNSEMMVDHALQATQWPLLGPEAYDADFLMGNCWSHFDLPRDASFSTP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02252 258 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Vimu6g02252 258 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Vimu6g02252 258 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 156 IPR045174 GO:0003700|GO:0006355
Vimu6g02252 258 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02252 Vimu-Chr6 19665884 19666660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02252 5 253 C2C2-Dof Transcription Factor Family AT3G52440 40.299 1.43e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu6g02252 zf-Dof 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02252 - - vun:114179652 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02252 6 19665884 19666660 Vimu6g02252 6 19665884 19666660 ECH
Vimu6g02252 6 19665884 19666660 Vimu3g00194 3 1651218 1652159 PCT