Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02249 ATGCAAGACTTGTTGTCCACCACCTCCTCCTGCCGTAGCAACCGGTTTCCGCCATCGTCGGCTCACAGTGTCATCGACATGGCAGGCTGCGACAACGACGATCGACCAACGAGCCTGGCCACGTACTTCGGCAACGTGGAAGCAATAACGGAAGAGCTGAACAAGGTGGAGAGGTTGAAGCAGAATCTGAAGAGGTCTCACGAACAAGGCAAGACCCTTCACAATGGCAAAGCCGTGAAGGACCACCGCTTCGCCATGGAAGCTGACGTGGCACTCGCTCTGGAGACCGCGAAGCTCATCATGTTCAAGTTGGAGACGCTTGAACGCGCCAACGCAGACCACCGGAGCCTCCCCGGTTGTGGACCGGGTTCGTCCTCCGACCGGTCCCGAACATCCGTGGTGTTCTCCCTGAGGAAGAAGCTGAAGGACTCCTTGGACGGCTTCAATGAACTCCGTCACCAGATAAATGTAGAACACCGTGAGACCGTCCAGCGCCAATACTTCACCGTGACGGGCAAAAATCCCGACGACGAAACCCTGGACCTCTTGATCTCTTCCGGTGAGAGTGAGAATTTAGTAGAAAGAGCGATTGAGGAGGGTAGAGGAAGAATTGAGGAGACTATTAAGGAAATAAAAGAGAGGCATAATGGGATGAAAGAGTTAGAGACGAATCTGAAGGAGTTGCACCAGGTGTTCCTTGACATGGCAGTGCTGATTCAATCTCAAGGTGAGCAATTGGATGACATAGAGATCCAGGTGGCAAGAACAAACTCCTTCGTCAGGAATGGGACTCAGAATCTGGAAATTGCAAGGAAGGAGCAAAAAAAACACCACAAATGGGGCTACTGTGCTATTATCCTTCTTCTCGCAATTGTGTTGTTCGTCGTTCTCTATTTTGTCAGACCATGGCGAAAGTAA 918 0.5142 MQDLLSTTSSCRSNRFPPSSAHSVIDMAGCDNDDRPTSLATYFGNVEAITEELNKVERLKQNLKRSHEQGKTLHNGKAVKDHRFAMEADVALALETAKLIMFKLETLERANADHRSLPGCGPGSSSDRSRTSVVFSLRKKLKDSLDGFNELRHQINVEHRETVQRQYFTVTGKNPDDETLDLLISSGESENLVERAIEEGRGRIEETIKEIKERHNGMKELETNLKELHQVFLDMAVLIQSQGEQLDDIEIQVARTNSFVRNGTQNLEIARKEQKKHHKWGYCAIILLLAIVLFVVLYFVRPWRK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02249 305 FunFam Syntaxin 132 201 301 - -
Vimu6g02249 305 Coils Coil 46 69 - -
Vimu6g02249 305 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu6g02249 305 Pfam SNARE domain 244 296 IPR000727 -
Vimu6g02249 305 Gene3D - 39 166 - -
Vimu6g02249 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 36 166 - -
Vimu6g02249 305 Pfam Syntaxin 42 243 IPR006011 GO:0016020
Vimu6g02249 305 SUPERFAMILY t-snare proteins 39 263 IPR010989 GO:0016020|GO:0016192
Vimu6g02249 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Vimu6g02249 305 CDD SynN 39 190 IPR006011 GO:0016020
Vimu6g02249 305 Gene3D - 203 301 - -
Vimu6g02249 305 SMART tSNARE_6 203 270 IPR000727 -
Vimu6g02249 305 SMART SynN_4 34 160 IPR006011 GO:0016020
Vimu6g02249 305 PANTHER SYNTAXIN 49 289 IPR045242 -
Vimu6g02249 305 CDD SNARE_syntaxin1-like 207 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02249 Vimu-Chr6 19638141 19639058 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02249 38 303 SNARE and Associated Proteins AT3G11820 59.551 5.28e-104 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02249 K08486 - cave:132191796 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02249 6 19638141 19639058 Vimu3g00200 3 1718355 1719761 PCT