Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02248 ATGAACGACTTGTTATCGAGTTTGTTCTCGAAGGGAAAGCAGCAGCAGCAGCAACAAGATGGGCAGCACGTGATTGAAATAACACAAGGTGGCATGGGCTTGGACAAGTTCTTCGAAGAAGTGGAATCGGTGAAGGAAGAACTGAAAGAGCTAGAGCGTCTCCACCTAAGTCTCCGTGCCTCAAACCAAAACGGAAAAGCGCTTCACAGCCCCAAGGGCGTTAGGGAGCTTCGGTCTCGCATGGACCTGGACGTCGCTCTTGCTCTCACCAAAGCCAAGCTCGTGAAGACTCGCTTGGAGGCTCTCCACCGCGCCAACCAAGCCACTCTCTCCTTGCCCGACTGCGGACCCGGTTCGTACTCCCACCGGACCCGAACCGCACTGGTCGGAGCCTTGACCAAGAATCTGAAACAGTCCATGGAGAGTTTTAATAAGCTGAGGGACCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCCGTCACCGGAGAGAACCCTGATCCTGACACCATTGATCTCCTCATCTCTACGGGTAACAAATAA 555 0.5315 MNDLLSSLFSKGKQQQQQQDGQHVIEITQGGMGLDKFFEEVESVKEELKELERLHLSLRASNQNGKALHSPKGVRELRSRMDLDVALALTKAKLVKTRLEALHRANQATLSLPDCGPGSYSHRTRTALVGALTKNLKQSMESFNKLRDQISYEYRDTVQRRYYAVTGENPDPDTIDLLISTGNK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02248 184 Coils Coil 34 61 - -
Vimu6g02248 184 MobiDBLite consensus disorder prediction 1 22 - -
Vimu6g02248 184 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Vimu6g02248 184 Gene3D - 34 161 - -
Vimu6g02248 184 SUPERFAMILY t-snare proteins 32 183 IPR010989 GO:0016020|GO:0016192
Vimu6g02248 184 Pfam Syntaxin 36 183 IPR006011 GO:0016020
Vimu6g02248 184 SMART SynN_4 29 155 IPR006011 GO:0016020
Vimu6g02248 184 CDD SynN 34 182 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02248 Vimu-Chr6 19631738 19632292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02248 28 182 SNARE and Associated Proteins AT3G11820 61.935 6.57e-64 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02248 K08486 - gmx:100790221 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02248 6 19631738 19632292 Vimu3g00201 3 1721286 1722863 PCT