Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02247 ATGAGACATGTATGTGATGACATTGCGATGGAGCAGAAAGCCATCCAACAGCAAGGGCGAGCCAGCATCATGGACACCATCCAAGAGATTCAGGAGAGGCATGGCACGGTAAAAGAGATAGAGAGAAGTCTACACGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGGTCCAACATCAGGGTGAACACTTGGATGACATAGAGAGCCACATGGCGCTTGCAAATTCCTCCGTCAGCAAAGGTGTGCATCATTTGCAGGTTGTGAAGAATCATCAGAAGAACACCCAAGTTGATCAGATTTTCATGTCAAACTGTGTGATCATTGGTAGTGGTGGCAAGGTGAAGAGAAGTCAAAGCTCATTTGACCCTCTTCCCATGTGGAAATGGCTTTCATTCTGTGATCGTGCTGAAGCTAAGCACTTTTATCTCTTCATGGCCTCTTTGAAAGAAGAGTTGGCCTCTTTGAAAGATGAGTAA 480 0.4604 MRHVCDDIAMEQKAIQQQGRASIMDTIQEIQERHGTVKEIERSLHELHQVFLDMAVLVQHQGEHLDDIESHMALANSSVSKGVHHLQVVKNHQKNTQVDQIFMSNCVIIGSGGKVKRSQSSFDPLPMWKWLSFCDRAEAKHFYLFMASLKEELASLKDE 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02247 159 SMART tSNARE_6 22 89 IPR000727 -
Vimu6g02247 159 Gene3D - 13 111 - -
Vimu6g02247 159 FunFam Syntaxin 132 20 112 - -
Vimu6g02247 159 Pfam Syntaxin 10 62 IPR006011 GO:0016020
Vimu6g02247 159 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 27 89 IPR000727 -
Vimu6g02247 159 PANTHER SYNTAXIN 19 108 IPR045242 -
Vimu6g02247 159 SUPERFAMILY SNARE fusion complex 24 94 - -
Vimu6g02247 159 ProSitePatterns Syntaxin / epimorphin family signature. 33 72 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu6g02247 159 CDD SNARE_syntaxin1-like 26 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02247 Vimu-Chr6 19630335 19631005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02247 12 97 SNARE and Associated Proteins AT3G11820 62.791 1.64e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02247 K08486 - gmx:100810727 157.147