Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02245 ATGGCTGCTGCAGCTTCTTTTTCCTCCTCTGTCTGCAACAGAATATACAACCTTTCCCTCACCCAGTCTTCCATTTCACGCACCTCCAACTTCCTTCAGAGACCCATTTTCCAAAAGCCACCCAATCTTAGCCACAAGTCCCAAAGTTTCAGTCTTTCATTTCTCCCACTTCATCGTCTGTCCCCACCGTTCGCCACCTTCGATGGTTTGGAAGTGGGTCAAGACATCACAGAGTCCCGACAAGACGAACCAGTAACAGAAACCTATGAAAAAACAGAACAAGAGGAAGAGCGAAAAGTTTCAGACTCCAGCGATAACGATGCCGGGAGGCTCTATATTGGAAACTTGCCATATTCAATTACTAATTCCCAATTGGCAGAGCTCTTTGGAGAAGCCGGCAGCGTGGTGTCTGTTGAGATTGTGTATGATCGCGTCACGGGTAGAAGCAGGGGATTCGCATTTGTTACAATGGCGAGTGTAGATGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCTAAGGTAAACTTCCCAGAGGTACCGAAAGGCGGGGAAAGATTGGTAATGGGGGCAAAAGTGAGGGACAACTACAGAGGGTTTGTAGACAGCCCTCACAAGATCTATTGTGGAAACCTTGGGTGGGGAGTGAACTCACAGGGTCTTAAAGAAGCTTTTGCTGAGCAGCCAGGCGTATTGAGTGCCAAAGTCGTCTATGAGAAGGACAGCGGAAGATCTCGAGGTTTCGGCTTTGTTTCTTTTACAACTGCTGAGTCTGCAGCAGCTGCCTTGGACTTTATGAATGGTGTGGAAGTACAAGGTCGGCCATTGCGGTTGAATTTGGCTGAGGCTAGGACAGCATCATCTCCTCCAGTACTTGAGGATAATGCAGGAATCAATGTTGAAAGCTCGGAATTGTTCTCAAGTGCCAGAACATAA 957 0.4754 MAAAASFSSSVCNRIYNLSLTQSSISRTSNFLQRPIFQKPPNLSHKSQSFSLSFLPLHRLSPPFATFDGLEVGQDITESRQDEPVTETYEKTEQEEERKVSDSSDNDAGRLYIGNLPYSITNSQLAELFGEAGSVVSVEIVYDRVTGRSRGFAFVTMASVDDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMGAKVRDNYRGFVDSPHKIYCGNLGWGVNSQGLKEAFAEQPGVLSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDFMNGVEVQGRPLRLNLAEARTASSPPVLEDNAGINVESSELFSSART 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02245 318 CDD RRM1_PSRP2_like 110 189 - -
Vimu6g02245 318 CDD RRM2_NsCP33_like 213 288 - -
Vimu6g02245 318 SUPERFAMILY RNA-binding domain, RBD 103 186 IPR035979 GO:0003676
Vimu6g02245 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Vimu6g02245 318 Gene3D - 71 192 IPR012677 -
Vimu6g02245 318 MobiDBLite consensus disorder prediction 76 106 - -
Vimu6g02245 318 MobiDBLite consensus disorder prediction 76 105 - -
Vimu6g02245 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Vimu6g02245 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Vimu6g02245 318 Gene3D - 197 296 IPR012677 -
Vimu6g02245 318 SMART rrm1_1 110 183 IPR000504 GO:0003723
Vimu6g02245 318 SMART rrm1_1 213 286 IPR000504 GO:0003723
Vimu6g02245 318 PANTHER OS02G0815200 PROTEIN 34 291 - -
Vimu6g02245 318 FunFam 33 kDa ribonucleoprotein, chloroplastic 194 298 - -
Vimu6g02245 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Vimu6g02245 318 SUPERFAMILY RNA-binding domain, RBD 209 292 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02245 Vimu-Chr6 19616424 19621041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02245 96 291 Eukaryotic Initiation Factors Gene Family AT3G16380 32.000 3.65e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02245 - - gmx:100814852 498.819