Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02244 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACACAATTCTGTGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGTGGAGTCCTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTCCTAACTGCATAAACCATCATGCTGCCAATAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACACACAACTCAGTTTACCATCTTTCCAGACATTTCTTCTTCAGATGATTGTAAAATGTCAGATGATGCGCAGACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTACGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCTAAAGCTGTTCTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAAATCTGGTAATGGAAATGGCAAAACTGGCAATGAAGTGCATGAAACTGTTGGTGAACGATTTCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGACCTTCTGTCCACAGTCTTGCAGACATGATAGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGGAGGGTTTGGTTCAATGCTGCACCAAACCTTTCCTTCATGAGACCAGATGAAGAAGCTTTGTTTCAGTTGACTGTGTTGACTGATCGTCCTAACATCTGGTCTAGGCAATTCATCCCTGGCTCATCATACTTTGGCAATCCATCCTTGGCTCATGGTAACTTTAGGCAACTCATCCTTGGCTCAATGTACCTGTAG 1179 0.4512 MAMQTVYLKEHEGNAHNSVGALSSAASAPWWSAFGSQPVHGVESCGQMKPFSLELPNCINHHAANKPSARGAEQVLGKGHTTQFTIFPDISSSDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSGNGNGKTGNEVHETVGERFHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGPSVHSLADMIDGGRGMIIPPKWAAAAGRVWFNAAPNLSFMRPDEEALFQLTVLTDRPNIWSRQFIPGSSYFGNPSLAHGNFRQLILGSMYL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02244 392 Gene3D - 165 227 - -
Vimu6g02244 392 MobiDBLite consensus disorder prediction 214 283 - -
Vimu6g02244 392 MobiDBLite consensus disorder prediction 246 283 - -
Vimu6g02244 392 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 60 288 IPR001289 GO:0003700|GO:0006355
Vimu6g02244 392 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 222 IPR001289 GO:0003700|GO:0006355
Vimu6g02244 392 SMART cbf3 164 225 IPR001289 GO:0003700|GO:0006355
Vimu6g02244 392 PRINTS CCAAT-binding transcription factor subunit B signature 168 190 IPR001289 GO:0003700|GO:0006355
Vimu6g02244 392 PRINTS CCAAT-binding transcription factor subunit B signature 199 222 IPR001289 GO:0003700|GO:0006355
Vimu6g02244 392 ProSiteProfiles NF-YA/HAP2 family profile. 165 225 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02244 Vimu-Chr6 19611576 19615091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02244 1 328 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.647 4.21e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vimu6g02244 CBFB_NFYA 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02244 K08064 - gmx:100815382 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02244 6 19611576 19615091 Vimu3g00216 3 1803337 1806435 PCT